Miyakogusa Predicted Gene

Lj1g3v1063580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1063580.1 tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1
OS=Triticum aestivum PE=1 SV=1,64.29,2e-19,60S ACIDIC RIBOSOMAL
PROTEIN FAMILY MEMBER,NULL; Ribosomal_60s,Ribosomal protein 60S;
seg,NULL,CUFF.26719.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g092600.1 | 60S acidic ribosomal protein | HC | chr3:42321...   120   2e-28
Medtr2g066750.1 | 60S acidic ribosomal protein | HC | chr2:27899...   120   2e-28
Medtr8g024350.1 | 60S acidic ribosomal protein | HC | chr8:89413...    95   1e-20
Medtr7g118060.2 | 60S acidic ribosomal protein | HC | chr7:49000...    80   3e-16
Medtr7g118060.1 | 60S acidic ribosomal protein | HC | chr7:49000...    80   3e-16
Medtr7g005740.1 | hypothetical protein | LC | chr7:323875-325274...    74   4e-14

>Medtr3g092600.1 | 60S acidic ribosomal protein | HC |
          chr3:42321505-42319755 | 20130731
          Length = 110

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/61 (95%), Positives = 60/61 (98%)

Query: 1  MSAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVL 60
          MS+GELGCIYATLILHDDGIPITAEKI TLLKAANVTVESYWPSLFAKLAQ+KNVDDLVL
Sbjct: 1  MSSGELGCIYATLILHDDGIPITAEKIGTLLKAANVTVESYWPSLFAKLAQSKNVDDLVL 60

Query: 61 N 61
          N
Sbjct: 61 N 61


>Medtr2g066750.1 | 60S acidic ribosomal protein | HC |
          chr2:27899753-27900085 | 20130731
          Length = 110

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/61 (95%), Positives = 60/61 (98%)

Query: 1  MSAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVL 60
          MS+GELGCIYATLILHDDGIPITAEKI TLLKAANVTVESYWPSLFAKLAQ+KNVDDLVL
Sbjct: 1  MSSGELGCIYATLILHDDGIPITAEKIGTLLKAANVTVESYWPSLFAKLAQSKNVDDLVL 60

Query: 61 N 61
          N
Sbjct: 61 N 61


>Medtr8g024350.1 | 60S acidic ribosomal protein | HC |
          chr8:8941377-8939969 | 20130731
          Length = 108

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 52/61 (85%)

Query: 1  MSAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVL 60
          MS GE+ C Y+ +ILHDD I +T EKI+TLLKAANV VE+YWPSLFAKLA+ KN+DDL+L
Sbjct: 1  MSIGEVACSYSLMILHDDNIAVTGEKISTLLKAANVNVEAYWPSLFAKLAEKKNLDDLIL 60

Query: 61 N 61
          N
Sbjct: 61 N 61


>Medtr7g118060.2 | 60S acidic ribosomal protein | HC |
          chr7:49000718-48999778 | 20130731
          Length = 113

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 45/59 (76%)

Query: 1  MSAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLV 59
          MS GE  C YA LIL DD IP TA+ I +LLK+A V VES+WP+LFAKLA+ KN+ DL+
Sbjct: 1  MSLGETACSYALLILEDDNIPATADNITSLLKSAKVDVESFWPALFAKLAEKKNIRDLI 59


>Medtr7g118060.1 | 60S acidic ribosomal protein | HC |
          chr7:49000638-48999939 | 20130731
          Length = 113

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 45/59 (76%)

Query: 1  MSAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLV 59
          MS GE  C YA LIL DD IP TA+ I +LLK+A V VES+WP+LFAKLA+ KN+ DL+
Sbjct: 1  MSLGETACSYALLILEDDNIPATADNITSLLKSAKVDVESFWPALFAKLAEKKNIRDLI 59


>Medtr7g005740.1 | hypothetical protein | LC | chr7:323875-325274
          | 20130731
          Length = 187

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 42/61 (68%), Gaps = 19/61 (31%)

Query: 1  MSAGELGCIYATLILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVL 60
          MS+GELGCIYATLILHDDGIPIT                   PSLFAKLAQ+KN+DDL+L
Sbjct: 1  MSSGELGCIYATLILHDDGIPIT-------------------PSLFAKLAQSKNIDDLIL 41

Query: 61 N 61
          N
Sbjct: 42 N 42