Miyakogusa Predicted Gene

Lj1g3v1063550.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1063550.1 Non Characterized Hit- tr|C5XL49|C5XL49_SORBI
Putative uncharacterized protein Sb03g002180
OS=Sorghu,46.07,0.000000000008,RRM,RNA recognition motif domain;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; RRM_1,RNA
recogni,CUFF.26718.1
         (314 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g092510.1 | CTC-interacting domain protein | HC | chr3:422...   509   e-144
Medtr3g092550.1 | CTC-interacting domain protein | HC | chr3:422...   477   e-135
Medtr2g070540.1 | CTC-interacting domain protein | HC | chr2:297...   269   2e-72
Medtr8g081640.3 | RNA recognition motif (RRM) containing protein...    55   8e-08
Medtr8g081640.2 | RNA recognition motif (RRM) containing protein...    55   8e-08
Medtr8g081640.1 | RNA recognition motif (RRM) containing protein...    55   8e-08
Medtr8g081640.4 | RNA recognition motif (RRM) containing protein...    55   8e-08
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341...    54   2e-07
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701...    54   2e-07
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    48   1e-05

>Medtr3g092510.1 | CTC-interacting domain protein | HC |
           chr3:42267137-42262435 | 20130731
          Length = 376

 Score =  509 bits (1311), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/329 (78%), Positives = 280/329 (85%), Gaps = 22/329 (6%)

Query: 1   MAVAENAGAKIGSSGQNLDNNNTVVSAEDSSEVEKSKTRTDQNLSNGG-FNHEHHPGNIA 59
           MAVAEN GAKIGSS QNLDNNN    + DS+EVEKSK RTDQ+++N   FNH+H      
Sbjct: 1   MAVAENVGAKIGSSSQNLDNNNNHAVSSDSTEVEKSKPRTDQDVNNNSVFNHQHQ----- 55

Query: 60  VPNGNYSYNA-QVGQMQANGVQNQQLVMNNDGY-------GENGDESFKRDMRDLAELLS 111
             NGNYS+   Q+GQM ANGVQN Q V+NNDGY       GENG ESFKR+MRDL ELLS
Sbjct: 56  --NGNYSFKTHQMGQMHANGVQNHQFVVNNDGYVMNGLRNGENGGESFKREMRDLEELLS 113

Query: 112 KLNPMAEEFVPPSLTNSHGYLA-GPNAGFGYPNNFILQNDF----GQTNRRRKNVYNS-G 165
           KLNPMAEEFVPPSLTN+HGYLA GP AGFGYPNNFIL N++    GQTNRRRKN Y + G
Sbjct: 114 KLNPMAEEFVPPSLTNNHGYLAAGPAAGFGYPNNFILLNNYANANGQTNRRRKNGYTTNG 173

Query: 166 KRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRF 225
           KRR  HK++MEKR+EMIRRTVYVSDIDQLVTEEQLA+LFLNCGQVVDCRVCGDPNSILRF
Sbjct: 174 KRRANHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRF 233

Query: 226 AFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYC 285
           AF+EFTDEE AR A++LSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYC
Sbjct: 234 AFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYC 293

Query: 286 TNIDKKLTQSDVKNFFESICGEVQRLRLL 314
           TNIDKKLTQ+DVK+FFESICGEV RLRLL
Sbjct: 294 TNIDKKLTQADVKHFFESICGEVHRLRLL 322



 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEE 234
           E   EM  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD     R AFVEF   E
Sbjct: 281 EDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAE 340

Query: 235 GARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRS 272
            A  AL+ SG +LG  P+RV PSKT   PV     PRS
Sbjct: 341 SAIAALSCSGVILGALPIRVSPSKT---PVRARSSPRS 375


>Medtr3g092550.1 | CTC-interacting domain protein | HC |
           chr3:42290596-42284870 | 20130731
          Length = 384

 Score =  477 bits (1227), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/334 (74%), Positives = 275/334 (82%), Gaps = 25/334 (7%)

Query: 1   MAVAENAGAKIGSSGQNLDNNNTVVSAEDSSEVEKSKTRTDQNLSNGGFNHE-----HHP 55
           MAVAEN G KI SS +NLDN  +VVS++ +  VEKSK +TDQNL+    N       +H 
Sbjct: 1   MAVAENVGTKIDSSSENLDN--SVVSSDSTEVVEKSKPKTDQNLNTNSVNTNVVGVINHQ 58

Query: 56  GNIAVPNGNYSYNA-QVGQMQANGVQNQQLVMNNDGYGENGDESFKRDMRDLAELLSKLN 114
              +VPNGN+ + A Q+ QM  NGVQNQ LV   DGYG NG ESFKR+MRDL ELLSKLN
Sbjct: 59  QQDSVPNGNHGFIAHQMSQMHGNGVQNQHLV---DGYGGNGGESFKREMRDLEELLSKLN 115

Query: 115 PMAEEFVPPSL-TNSHGYLA-GPNAGFGYPNN-FILQNDF-----------GQTNRRRKN 160
           PMAEEFVPPSL TN HGYLA GPNAGFGYPNN F+LQN+F           GQ NRRRKN
Sbjct: 116 PMAEEFVPPSLVTNYHGYLAAGPNAGFGYPNNNFMLQNNFGNANANATANNGQINRRRKN 175

Query: 161 VYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPN 220
            YN+ KRR++HK++MEKR+EMIRRTVYVSDIDQ VTEEQLAALFLNCGQVVDCRVCGDPN
Sbjct: 176 GYNNAKRRVYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPN 235

Query: 221 SILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCS 280
           SILRFAFVEFTDE GAR ALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMC+
Sbjct: 236 SILRFAFVEFTDEVGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCT 295

Query: 281 RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLL 314
           RTIYCTN+DKKLTQ+DVK+FFESICGEVQRLRLL
Sbjct: 296 RTIYCTNLDKKLTQADVKHFFESICGEVQRLRLL 329



 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEE 234
           E   EM  RT+Y +++D+ +T+  +   F + CG+V   R+ GD +   R AFVEF   E
Sbjct: 288 EDEREMCTRTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAE 347

Query: 235 GARTALNLSGTMLGYYPLRVLPSKTAI 261
            A  AL+ SG +LG  P+RV PSKT +
Sbjct: 348 SAIAALSCSGVVLGSLPIRVSPSKTPV 374


>Medtr2g070540.1 | CTC-interacting domain protein | HC |
           chr2:29723724-29729859 | 20130731
          Length = 298

 Score =  269 bits (688), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/219 (61%), Positives = 170/219 (77%), Gaps = 10/219 (4%)

Query: 103 MRDLAELLSKLNPMAEEFVPPSLTNSHGYLAGPNAGFGY--PNNFILQND-----FGQTN 155
           ++ L ++ +KLNP+A+EF P S + +H +      GF    PN+F++            N
Sbjct: 28  VQKLVDMFTKLNPLAKEFFPSSYSPNHDH---GRQGFNLITPNHFLVNTKPSANDNNPNN 84

Query: 156 RRRKNVYNSGKRRIFHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRV 215
           RRR+N +  G+RR+  +    +R++ +RRTVYVSDIDQ VTEE+LAALF NCGQV+DCR+
Sbjct: 85  RRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRI 144

Query: 216 CGDPNSILRFAFVEFTDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDE 275
           CGDP+S+LRFAFVEF DE GAR ALNL GT+LGYYP+RVLPSKTAI PVNPTFLPRS+DE
Sbjct: 145 CGDPHSVLRFAFVEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDE 204

Query: 276 REMCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLL 314
           REMC+RT+YCTNIDKK++Q++VKNFFES CGEV RLRLL
Sbjct: 205 REMCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLL 243



 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 180 EMIRRTVYVSDIDQLVTEEQLAALF-LNCGQVVDCRVCGDPNSILRFAFVEFTDEEGART 238
           EM  RTVY ++ID+ +++ ++   F  +CG+V   R+ GD     R AFVEF   E A  
Sbjct: 206 EMCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIV 265

Query: 239 ALNLSGTMLGYYPLRVLPSKTAIAP 263
           ALN SG +LG  P+RV PSKT + P
Sbjct: 266 ALNCSGMLLGTQPIRVSPSKTPVRP 290


>Medtr8g081640.3 | RNA recognition motif (RRM) containing protein |
           HC | chr8:35236572-35228497 | 20130731
          Length = 1047

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 178 RDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGAR 237
           +++++++T+ VS++  L+T EQL  LF  CG VV+C +    +    FA++E++  E A 
Sbjct: 324 KEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPEEAA 379

Query: 238 TALNLSGTMLGYYPLRVLPSKTAIAPVNPTF 268
            A+ L+   +G  PL V  +K+   P  PT 
Sbjct: 380 AAMALNNIDVGGRPLNVEMAKS--LPPKPTM 408


>Medtr8g081640.2 | RNA recognition motif (RRM) containing protein |
           HC | chr8:35236572-35228497 | 20130731
          Length = 1047

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 178 RDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGAR 237
           +++++++T+ VS++  L+T EQL  LF  CG VV+C +    +    FA++E++  E A 
Sbjct: 324 KEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPEEAA 379

Query: 238 TALNLSGTMLGYYPLRVLPSKTAIAPVNPTF 268
            A+ L+   +G  PL V  +K+   P  PT 
Sbjct: 380 AAMALNNIDVGGRPLNVEMAKS--LPPKPTM 408


>Medtr8g081640.1 | RNA recognition motif (RRM) containing protein |
           HC | chr8:35236572-35228497 | 20130731
          Length = 1047

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 178 RDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGAR 237
           +++++++T+ VS++  L+T EQL  LF  CG VV+C +    +    FA++E++  E A 
Sbjct: 324 KEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPEEAA 379

Query: 238 TALNLSGTMLGYYPLRVLPSKTAIAPVNPTF 268
            A+ L+   +G  PL V  +K+   P  PT 
Sbjct: 380 AAMALNNIDVGGRPLNVEMAKS--LPPKPTM 408


>Medtr8g081640.4 | RNA recognition motif (RRM) containing protein |
           HC | chr8:35236578-35228497 | 20130731
          Length = 1047

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 178 RDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEEGAR 237
           +++++++T+ VS++  L+T EQL  LF  CG VV+C +    +    FA++E++  E A 
Sbjct: 324 KEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FAYIEYSKPEEAA 379

Query: 238 TALNLSGTMLGYYPLRVLPSKTAIAPVNPTF 268
            A+ L+   +G  PL V  +K+   P  PT 
Sbjct: 380 AAMALNNIDVGGRPLNVEMAKS--LPPKPTM 408


>Medtr4g085540.1 | polyadenylate-binding protein | HC |
           chr4:33416965-33423437 | 20130731
          Length = 654

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 14/109 (12%)

Query: 170 FHKIEMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFA-FV 228
           F +   E  D+     +YV ++D  + +E+L  LF + G +  C+V  DPN + R + FV
Sbjct: 302 FEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFV 361

Query: 229 EF-TDEEGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDER 276
            F T EE +R  L ++G M+   PL V            T   R ED R
Sbjct: 362 AFSTPEEASRALLEMNGKMVASKPLYV------------TLAQRKEDRR 398



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 15/126 (11%)

Query: 182 IRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNS--ILRFAFVEFTDEEGARTA 239
           +  ++YV D+D  VT+ QL  LF   GQVV  RVC D  +   L + +V +++ + A  A
Sbjct: 32  VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 91

Query: 240 LN-LSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVK 298
           L+ L+ T L   P+R++ S             R    R+     I+  N+DK +    + 
Sbjct: 92  LDVLNFTPLNNRPIRIMYSH------------RDPSIRKSGQGNIFIKNLDKAIDHKALH 139

Query: 299 NFFESI 304
           + F S 
Sbjct: 140 DTFSSF 145


>Medtr3g102040.1 | polyadenylate-binding protein | HC |
           chr3:47012095-47003272 | 20130731
          Length = 622

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 176 EKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFA-FVEF-TDE 233
           E  D+     +Y+ ++D  VT+E+L+ LF   G V  C++  DP  I R + FV F T E
Sbjct: 298 ETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPE 357

Query: 234 EGARTALNLSGTMLGYYPLRVLPSK 258
           E  R    ++G M+   PL V P++
Sbjct: 358 EATRALAEMNGKMVAGKPLYVAPAQ 382



 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 16/133 (12%)

Query: 179 DEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNS--ILRFAFVEFTDEEGA 236
           +++   ++YV D+D  VT+ QL  LF   GQVV  R+C D  S   L + +V F++   A
Sbjct: 19  NQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDA 78

Query: 237 RTALN-LSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQS 295
             A++ L+ T L   P+R++ S             R    R+  +  I+  N+D+ +   
Sbjct: 79  AKAMDVLNFTPLNNKPIRIMYSH------------RDPSVRKSGAANIFIKNLDRAIDHK 126

Query: 296 DVKNFFESICGEV 308
            + + F SI G +
Sbjct: 127 ALYDTF-SIFGNI 138


>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:28567458-28562229 | 20130731
          Length = 600

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 184 RTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILR-FAFVEFTDEEGARTALNL 242
           +T++V ++   V    +   F +CG+VVD R   D     + F  VEF   E A++AL +
Sbjct: 341 KTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALEM 400

Query: 243 SGTMLGYYPLR--VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVK-- 298
           +G  L    +R  +   + A  P N +        R   S+T++    DK L + +++  
Sbjct: 401 NGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGEDEIRAK 459

Query: 299 --NFFESICGEVQRLRL 313
               F   CGE  R+ +
Sbjct: 460 LMEHFGGTCGEPTRVSI 476