Miyakogusa Predicted Gene
- Lj1g3v1020030.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1020030.1 Non Characterized Hit- tr|I1ICQ5|I1ICQ5_BRADI
Uncharacterized protein (Fragment) OS=Brachypodium
dis,54.32,4e-19,FBOX,F-box domain, cyclin-like; no description,NULL;
F-box domain,F-box domain, cyclin-like; A
Recep,NODE_58450_length_878_cov_48.274487.path2.1
(166 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g092020.1 | F-box-like protein | HC | chr3:41994066-419967... 262 1e-70
>Medtr3g092020.1 | F-box-like protein | HC | chr3:41994066-41996724
| 20130731
Length = 162
Score = 262 bits (669), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/166 (76%), Positives = 142/166 (85%), Gaps = 4/166 (2%)
Query: 1 MEGLPLEICMNIFCFLDYQHLAVAQQVCKKWKVMASENAIWSNLFLERWGGDRADFYAPT 60
ME LPLEICM IFCFLD+ HLAV+QQVC+KWK+MAS+NA+WSNLF ERWGGD A FYAP
Sbjct: 1 METLPLEICMKIFCFLDHTHLAVSQQVCRKWKLMASDNALWSNLFKERWGGDHAAFYAPL 60
Query: 61 GSKSWKDVYEVQDRCDRVGVGLKIIREGCDYYLVHLGEIQQYLGSRKNREQATSQSCHTS 120
GSKSWK+VYE QDRCDRVG+GLKI+REG DYYLVH GE+Q+YLGSRK R Q S HTS
Sbjct: 61 GSKSWKEVYEAQDRCDRVGLGLKIVREGSDYYLVHQGEVQRYLGSRKYRRQL---SGHTS 117
Query: 121 SSEKRDLSGEGSLAEERSCRGILDRILFFIGDLEVASAGAKRSRLI 166
SSE D +GE S+AEERSCRGILD+ILFFIGDLE AS AKRSR+I
Sbjct: 118 SSET-DFTGESSVAEERSCRGILDKILFFIGDLEAASVDAKRSRVI 162