Miyakogusa Predicted Gene

Lj1g3v1019020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1019020.1 tr|A9TWI7|A9TWI7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_172369,29.3,0.0000000000001,SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL,NODE_28861_length_1541_cov_106.963661.path2.1
         (201 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g091940.1 | secretory pathway protein Sec39 | HC | chr3:41...   329   9e-91

>Medtr3g091940.1 | secretory pathway protein Sec39 | HC |
            chr3:41972301-41958493 | 20130731
          Length = 2391

 Score =  329 bits (844), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 160/202 (79%), Positives = 182/202 (90%), Gaps = 3/202 (1%)

Query: 1    MDCFLALKMTLLLPYKTLQLECLSAVEDNIRQGIPEARSKDFELLVLILTSGILTSIMTD 60
            MDCFLALKM+L+LPYKTLQL+CL AVED++RQGIP+ RSKD ELL+LIL+SGILTSI T 
Sbjct: 2192 MDCFLALKMSLMLPYKTLQLQCLGAVEDSVRQGIPQTRSKDCELLILILSSGILTSIATG 2251

Query: 61   SSYGTTFSYLCYLVGNLSNQCQQALVPGRGFANSEDQENELLLFRRILFPYFISELVKAD 120
            S+YGTTFSYLCY+VGNLSN+CQQAL  GRGF NSED EN+   FRRILFP FI+ELVKAD
Sbjct: 2252 STYGTTFSYLCYMVGNLSNRCQQALASGRGFTNSEDSENQ--FFRRILFPNFITELVKAD 2309

Query: 121  QHVLAGFLVTKFMHTNESLSLINIAGASLNRYLEKQLHMLQGNEFHVE-KTCKTLKNTIS 179
            QHVLAGF+VTKFMHT+ESL+LI+IA ASLNRYLE+QLHMLQ NEF VE + CKTL+NT+S
Sbjct: 2310 QHVLAGFIVTKFMHTSESLNLISIANASLNRYLERQLHMLQANEFQVEMECCKTLRNTVS 2369

Query: 180  RLRGKLSNLIQSTLPLLSASVS 201
            RLRG+L NLIQSTLPLLS SVS
Sbjct: 2370 RLRGRLINLIQSTLPLLSCSVS 2391