Miyakogusa Predicted Gene

Lj1g3v0958820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0958820.1 Non Characterized Hit- tr|A5BTF0|A5BTF0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,43.8,4e-19,seg,NULL,CUFF.26579.1
         (153 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1262s0010.1 | hypothetical protein | HC | scaffold1262:34-1...    84   6e-17
Medtr4g020870.1 | hypothetical protein | LC | chr4:6720953-67198...    55   2e-08

>Medtr1262s0010.1 | hypothetical protein | HC | scaffold1262:34-1511
           | 20130731
          Length = 404

 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 7/119 (5%)

Query: 35  RYKDLVGKERIYKFLLGLNKDLDEVRGRILGTKPLPKIREAFSEVRREESRRKLKLGTXX 94
            Y+ +V    ++KFL GLN + DEVRGRILG  P+P I E F+EVRREESRR++ L    
Sbjct: 175 HYQKMVDVSCVFKFLAGLNVEFDEVRGRILGRNPIPPIGEVFAEVRREESRRQVMLEKKK 234

Query: 95  XXXXXXXXXXXXRGNQPQPPT-------KKTRPWCDQCKRPGHTKENCWSIYGKPPEAK 146
                          Q    +         T   CD C R  HT+E C+ ++G+P  +K
Sbjct: 235 VVVPPPVEGSALAVPQVNHKSFCNPRGGDNTHLVCDYCGRNRHTQETCFKLHGRPNNSK 293


>Medtr4g020870.1 | hypothetical protein | LC |
          chr4:6720953-6719863 | 20130731
          Length = 178

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 25 TYMKKLNGAVRYKDLVGKERIYKFLLGLNKDLDEVRGRILGTKPLPKIREAFSEVRREES 84
          T + ++ G V  +     +R++ FL+GLN  LDEV+GRIL   PLP +RE F EVRR+  
Sbjct: 2  TALAEVAGMVLMRQ--ENDRVFMFLVGLNNCLDEVQGRILEEIPLPTLRETFLEVRRKIE 59

Query: 85 RR 86
          R 
Sbjct: 60 RH 61