Miyakogusa Predicted Gene

Lj1g3v0948480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0948480.1 CUFF.26545.1
         (64 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g090830.1 | arabinogalactan peptide-like protein | HC | ch...    82   2e-16
Medtr1g028610.1 | arabinogalactan peptide-like protein | HC | ch...    50   4e-07

>Medtr3g090830.1 | arabinogalactan peptide-like protein | HC |
          chr3:41234931-41234172 | 20130731
          Length = 63

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 43/61 (70%)

Query: 4  VSGASFRVVVFLGLIYAALMSVACSQSTAPAPAPTSDGTSIDQXXXXXXXXXXXXXTYLI 63
          VS ASFRVV FLGLIYA L+SVACSQS APAPAPTSDGT IDQ             TY+I
Sbjct: 3  VSCASFRVVAFLGLIYATLISVACSQSIAPAPAPTSDGTKIDQAIACVLMLVALVLTYII 62

Query: 64 H 64
          H
Sbjct: 63 H 63


>Medtr1g028610.1 | arabinogalactan peptide-like protein | HC |
          chr1:9704641-9703281 | 20130731
          Length = 62

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 8  SFRVVVFLGLIYAALMSVACSQ--STAPAPAPTSDGTSIDQXXXXXXXXXXXXXTYLIH 64
          SF VVVFLGLIYA+  S+A SQ  + APAPAPTSDGTSIDQ             TY+IH
Sbjct: 4  SFWVVVFLGLIYASFASMASSQYVAPAPAPAPTSDGTSIDQAIAYVLMLVALLLTYIIH 62