Miyakogusa Predicted Gene

Lj1g3v0913120.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0913120.1 Non Characterized Hit- tr|A2ZR97|A2ZR97_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,68.25,6e-19,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.26520.1
         (128 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g076070.1 | pathogenesis-like protein | HC | chr2:31855194...   118   1e-27
Medtr2g076010.1 | pathogenesis-like protein | HC | chr2:31817621...   112   7e-26
Medtr8g058350.1 | pathogenesis-like protein | HC | chr8:20093581...   108   2e-24

>Medtr2g076070.1 | pathogenesis-like protein | HC |
           chr2:31855194-31858191 | 20130731
          Length = 227

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 77/112 (68%), Gaps = 2/112 (1%)

Query: 6   VEKDKYRTYLHGDQEKNTKWRFGAPPNYEAVNKLFEEGRTKEWPPGSLEEQVQTLVKNWE 65
           V KDKYR+ LH D+ +N +WR G PP Y  VN+LFEEGRTKEWP GSLEE VQ  +K+WE
Sbjct: 5   VAKDKYRSILH-DEAENIQWRHGGPPTYGLVNQLFEEGRTKEWPEGSLEETVQNAIKSWE 63

Query: 66  MEFFHKVDINDFRSIDPKKFTFSLNGRKPMSXXXXXXXXXXYIPMLQTFLPQ 117
           ME  HK+ + DF++I P+KF F +NGR+ ++          Y  +L++ LP+
Sbjct: 64  MELTHKIRLQDFKTIVPEKFKFFVNGREGLT-AEETLSIGSYNALLKSSLPE 114


>Medtr2g076010.1 | pathogenesis-like protein | HC |
           chr2:31817621-31815294 | 20130731
          Length = 227

 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 3   SPSVEKDKYRTYLHGDQEKNTKWRFGAPPNYEAVNKLFEEGRTKEWPPGSLEEQVQTLVK 62
           S  V KDKYR+ LH D+ +N  WR G PP Y  VN+LFEEGRTK WP GSLEE VQ  +K
Sbjct: 2   SNMVAKDKYRSILH-DEAENIHWRHGGPPTYGLVNQLFEEGRTKVWPEGSLEETVQNAIK 60

Query: 63  NWEMEFFHKVDINDFRSIDPKKFTFSLNGRKPMSXXXXXXXXXXYIPMLQTFLPQKL 119
           +WEME  HK+ + DF++I P+KF   +NGR  ++          Y  +L++ LP+  
Sbjct: 61  SWEMELSHKIRLQDFKTIVPEKFKLFVNGRDGLT-AEETLSLGSYNALLKSSLPENF 116


>Medtr8g058350.1 | pathogenesis-like protein | HC |
          chr8:20093581-20097032 | 20130731
          Length = 237

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 6  VEKDKYRTYLHGDQEKNTKWRFGAPPNYEAVNKLFEEGRTKEWPPGSLEEQVQTLVKNWE 65
          VE DKYR++L  D+   T+WR G PP Y+ VNKLFE+GRTK WP GSLEE VQ  +K+WE
Sbjct: 10 VEGDKYRSFLD-DEAHTTQWRHGGPPIYDVVNKLFEQGRTKVWPEGSLEETVQNAIKSWE 68

Query: 66 MEFFHKVDINDFRSIDPKKFTFSLNGRKPMS 96
          ME  HK  + DF++I+P+KF   +NG + ++
Sbjct: 69 MELSHKTRVQDFKTINPEKFKLFVNGTEGLT 99