Miyakogusa Predicted Gene

Lj1g3v0900960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0900960.1 tr|Q43486|Q43486_HORVU B32E protein OS=Hordeum
vulgare GN=B32E PE=2 SV=1,36.2,5e-19,GB DEF: SEED PROTEIN B32E
(FRAGMENT),NULL; VHS DOMAIN CONTAINING PROTEIN FAMILY,NULL; seg,NULL;
GAT,,CUFF.26521.1
         (261 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088805.1 | ENTH/VHS/GAT family protein | HC | chr3:406273...   300   1e-81
Medtr1g026840.1 | ENTH/VHS/GAT family protein | HC | chr1:881077...    54   1e-07
Medtr3g110108.1 | ENTH/VHS/GAT family protein | HC | chr3:510182...    52   7e-07
Medtr3g110108.2 | ENTH/VHS/GAT family protein | HC | chr3:510182...    51   1e-06

>Medtr3g088805.1 | ENTH/VHS/GAT family protein | HC |
           chr3:40627393-40621194 | 20130731
          Length = 507

 Score =  300 bits (767), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/267 (65%), Positives = 191/267 (71%), Gaps = 26/267 (9%)

Query: 1   MLLVNNTTDEELLSQGLALNDSLQRELDRHDDIAKGTANSGAREAD---LPLVNVNHEDD 57
           MLLVN+T DEELL  GLALNDSLQR L +HD+IAKGTANSGARE D   LPLV+VNHEDD
Sbjct: 232 MLLVNSTADEELLGLGLALNDSLQRVLLQHDNIAKGTANSGAREVDTPVLPLVHVNHEDD 291

Query: 58  ESEDDFAQLAPRSSRDTNAQNRKPAYDEAESGRVNSFSPPPPASRKPVYSGTGAVDYLSG 117
           ESEDDF QLA RSSRDT+ QNRKP     ES R+NS  PPPPASR PVYSGT  VDYLSG
Sbjct: 292 ESEDDFGQLAHRSSRDTHTQNRKP-----ESVRMNSLIPPPPASRMPVYSGTSMVDYLSG 346

Query: 118 DAYKAEGSRENSEPTSLAVPLDSSLNPTASLI-----------------FNKQPVYDEPS 160
           DAYKAEGS ENSEPTS A PL SS NPT+S I                 +++QP+YDEPS
Sbjct: 347 DAYKAEGSLENSEPTSFAAPLHSSPNPTSSAIPTESSTHPHATTTSSPIYSRQPIYDEPS 406

Query: 161 PMNKSSEHLPPAPWDTXXXXXXXXXXXKHNQRQQFFEQHXXXXXXXXXXXXXXXLVGQTQ 220
           PM K+SE LPPAPWDT           K+NQRQQFFEQ                L+GQTQ
Sbjct: 407 PM-KTSEPLPPAPWDTQAPVVIPPPPSKYNQRQQFFEQQGSSHSSNGSSSSTDSLLGQTQ 465

Query: 221 NLSLNSSTPPKQQKPEDALFKDLVDFA 247
           NLSLNSSTP K+QKPEDALFKDLVDFA
Sbjct: 466 NLSLNSSTPTKEQKPEDALFKDLVDFA 492


>Medtr1g026840.1 | ENTH/VHS/GAT family protein | HC |
           chr1:8810775-8799978 | 20130731
          Length = 674

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 60/133 (45%), Gaps = 30/133 (22%)

Query: 3   LVNNTTDEELLSQGLALNDSLQRELDRHDDIAKGTANSGAREADLPLVNVNHEDDESEDD 62
           LVN+TTDE LL QGLALND LQR L RH+ I  GT+            N N  +D     
Sbjct: 236 LVNSTTDESLLCQGLALNDDLQRLLARHESILSGTSTQ----------NGNQIEDSKPAS 285

Query: 63  FAQL----APRS-SRDTNAQ--NRKPAYDEAESGRVNSFSPPPPASRKPVYSGTGAV--- 112
             QL    AP   + DT  Q   R  +  EA S  +N    P PA+     S   AV   
Sbjct: 286 ARQLVDIDAPLVDTGDTGKQTDGRSSSGAEAGSQTLNQLMLPAPAT-----SNGSAVPAK 340

Query: 113 -----DYLSGDAY 120
                D LSGD Y
Sbjct: 341 ADPKWDLLSGDNY 353


>Medtr3g110108.1 | ENTH/VHS/GAT family protein | HC |
           chr3:51018237-51025995 | 20130731
          Length = 668

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query: 3   LVNNTTDEELLSQGLALNDSLQRELDRHDDIAKGTA 38
           LVN+T+DE LL QGLALND LQR L +H+ I+ G A
Sbjct: 237 LVNSTSDESLLCQGLALNDDLQRVLSKHESISSGAA 272


>Medtr3g110108.2 | ENTH/VHS/GAT family protein | HC |
           chr3:51018237-51025995 | 20130731
          Length = 481

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query: 3   LVNNTTDEELLSQGLALNDSLQRELDRHDDIAKGTA 38
           LVN+T+DE LL QGLALND LQR L +H+ I+ G A
Sbjct: 237 LVNSTSDESLLCQGLALNDDLQRVLSKHESISSGAA 272