Miyakogusa Predicted Gene

Lj1g3v0900940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0900940.1 Non Characterized Hit- tr|F6HUJ2|F6HUJ2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,36.31,1e-18,Staygreen,Staygreen protein; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.26503.1
         (252 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088795.1 | staygreen protein | HC | chr3:40615462-4061876...   377   e-105
Medtr5g011120.1 | senescence-inducible stay-green protein | HC |...   179   2e-45

>Medtr3g088795.1 | staygreen protein | HC | chr3:40615462-40618761 |
           20130731
          Length = 269

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/241 (80%), Positives = 205/241 (85%), Gaps = 14/241 (5%)

Query: 25  NNMLLKPSARCRPFLLS-------------SINNSTPSYNTLVSEAVRLLVPPAKFEASK 71
           N     P+ R  PF+L              +  NSTPSYN+LV E VRLL PPAKFEA+K
Sbjct: 11  NAFSFSPTTRVFPFMLKPSSSFRCSSSSSITTTNSTPSYNSLVYETVRLLGPPAKFEATK 70

Query: 72  LKVVLLEDQMNKYASIIPRTYILSHCDLTANLTLAVSNVIKLEQLRGWYEKDDVVAEWKK 131
           LKVVLLEDQ+N+YASIIPRTYILSHCDLTANLTLAVSNVIKLEQLRGWYEKDDVVAEWKK
Sbjct: 71  LKVVLLEDQINRYASIIPRTYILSHCDLTANLTLAVSNVIKLEQLRGWYEKDDVVAEWKK 130

Query: 132 VKNEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQYGDSVLFHEHPELLDSI 191
           VKNEMCLHVHCFVSGP  FLDLAAEFRYHIFSKEM LVLKAIQYGDSVLF EHPELLDSI
Sbjct: 131 VKNEMCLHVHCFVSGPT-FLDLAAEFRYHIFSKEMTLVLKAIQYGDSVLFQEHPELLDSI 189

Query: 192 VRIYFHSSSKKYNRMECWGPLKDAMEGKQADQIQGLISRDCPPEKCRSPKSIFQALFAFL 251
           VR+YFHSSSKKYNRMECWGPLKDAMEGK+ADQ+QGLI+RD PPEK  SP S FQALFAFL
Sbjct: 190 VRVYFHSSSKKYNRMECWGPLKDAMEGKRADQLQGLINRDRPPEKLGSPMSNFQALFAFL 249

Query: 252 L 252
           L
Sbjct: 250 L 250


>Medtr5g011120.1 | senescence-inducible stay-green protein | HC |
           chr5:3162017-3164385 | 20130731
          Length = 263

 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 122/181 (67%), Gaps = 6/181 (3%)

Query: 58  VRLLVPPAKFEASKLKVVLLEDQMNKYASIIPRTYILSHCDLTANLTLAVSNVIKLEQLR 117
           V  L  PA FEASKLKV+ L    +K+   +PRTY L+H D+T+ LTLA+S  I   QL+
Sbjct: 44  VARLFGPAIFEASKLKVLFLGIDEDKHPGNLPRTYTLTHSDVTSKLTLAISQTINNSQLQ 103

Query: 118 GWY---EKDDVVAEWKKVKNEMCLHVHCFVSGPNPFLDLAAEFRYHIFSKEMPLVLKAIQ 174
           GWY   ++D+VVA+WKKVK +M LHVHC +SG +  LD+ A  RY IF KE+P+VLKA  
Sbjct: 104 GWYNRLQRDEVVAQWKKVKGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELPVVLKAFV 163

Query: 175 YGDSVLFHEHPELLDSIVRIYFHSSSKKYNRMECWGPLKDAME---GKQADQIQGLISRD 231
           +GD  LF+ +PEL +++V +YFHS   ++N++ECWGPLK+A +   G Q D     +   
Sbjct: 164 HGDGNLFNNYPELQEALVWVYFHSKIPEFNKVECWGPLKEASQPTSGTQRDHQNLTLPEP 223

Query: 232 C 232
           C
Sbjct: 224 C 224