Miyakogusa Predicted Gene

Lj1g3v0897620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0897620.1 tr|Q063L2|Q063L2_9SYNE NAD(P)H-quinone
oxidoreductase subunit M OS=Synechococcus sp. BL107 GN=ndhM
P,46.3,4e-19,seg,NULL; coiled-coil,NULL; NdhM,NAD(P)H-quinone
oxidoreductase subunit M,CUFF.26474.1
         (216 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088645.1 | NAD(P)H-quinone oxidoreductase subunit M | HC ...   320   9e-88

>Medtr3g088645.1 | NAD(P)H-quinone oxidoreductase subunit M | HC |
           chr3:40380356-40381979 | 20130731
          Length = 214

 Score =  320 bits (819), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 155/214 (72%), Positives = 172/214 (80%), Gaps = 3/214 (1%)

Query: 1   MATSCSYMVSTKLSMLGWTGGGRTGLKNKRAFFISAQQQTTDVXXXXXXXXXXXXXXXXX 60
           MATSCSYMVSTKLS+LGWTGG R  ++N+  FFISAQQQ+ DV                 
Sbjct: 1   MATSCSYMVSTKLSILGWTGGRRKEVRNRTPFFISAQQQS-DVKETDGVKVGEEKEIPQN 59

Query: 61  XXXMNPKGVKPRPAETQINVKSKNMSREYGGQWLSTATRHVRIYAAYIDPETWEFDQTQM 120
              +NPKG KPRP E Q+ VK + M+REYGGQWLS ATRHVRIYAAYIDPET  FDQTQM
Sbjct: 60  QQ-INPKGTKPRPVEPQVIVKDQGMTREYGGQWLSCATRHVRIYAAYIDPETSAFDQTQM 118

Query: 121 DKLTLLLDPQDEFVWNPETCNMVFSYFQELVDHYEGSQLTEYTLRLIGSDIEHYIRKLLY 180
           DKLTL+LDP DEFVWNP+TCN+V+SYFQELVDHYEG+ L EYTLRLIGSDIEHYIRKLLY
Sbjct: 119 DKLTLILDPTDEFVWNPDTCNLVYSYFQELVDHYEGAPLNEYTLRLIGSDIEHYIRKLLY 178

Query: 181 DGKLKYNMNARVLNFSMGKPRVML-NNDIKPEDT 213
           DG +KYNMNARVLNFSMGKPR+M  NNDI+PED 
Sbjct: 179 DGVIKYNMNARVLNFSMGKPRIMFNNNDIQPEDA 212