Miyakogusa Predicted Gene
- Lj1g3v0874340.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0874340.2 tr|B9IAZ0|B9IAZ0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_834991 PE=4
SV=1,29.62,0.00000000005,seg,NULL,CUFF.26460.2
(392 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g088495.1 | DnaJ domain protein | HC | chr3:40226149-40220... 166 4e-41
Medtr3g088495.3 | DnaJ domain protein | HC | chr3:40226149-40222... 165 6e-41
Medtr3g088495.2 | DnaJ domain protein | HC | chr3:40226149-40220... 165 6e-41
Medtr2g087190.1 | Serine/Threonine kinase domain protein | LC | ... 59 6e-09
Medtr2g087100.1 | hypothetical protein | LC | chr2:36612660-3661... 53 5e-07
>Medtr3g088495.1 | DnaJ domain protein | HC | chr3:40226149-40220895
| 20130731
Length = 521
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 117 VYVDDIFGGMNNKQSVGVDDLLDKIGGLHA-NTKSSNEKGIDSDELIPGFGGSNVSNNGK 175
VYVDDIFGG+N K +VGVDDLL+ IGGLHA N+KSS +K D + + GFGGS+VSNNGK
Sbjct: 106 VYVDDIFGGVNQK-TVGVDDLLNNIGGLHATNSKSSIKKSHDFGDFMSGFGGSSVSNNGK 164
Query: 176 TGFQMNKPHKPAATLKSPPAPANSDPFLVFETSASTGASDSFLDSLEHIXXXXXXXXXXX 235
+ N P KP AT + DPFLVFETS+ST +S+SFLDSLE I
Sbjct: 165 ASIEKNNPRKPTAT-------PHDDPFLVFETSSSTASSESFLDSLEQITKNSSKHTSGS 217
Query: 236 XXXXXXXX--XXXXXXXXXXXXXXXXXXIDELEDFAMGQVHNNASKKANVNTGEIKQNLA 293
IDELE+FA G+V +N S+KAN NTGEIKQN A
Sbjct: 218 SSTSPLLRPPPKPVNASNSINNSSLSSSIDELENFAKGRVQSNPSRKANTNTGEIKQNSA 277
Query: 294 AKTNRDKGAPAARTNKLNDVDDLEXXXXXXXXXXXVPKSR 333
AK +D+GAPAAR N+LN DDLE PKSR
Sbjct: 278 AKPVKDRGAPAARVNQLNGADDLESFFSMGSRSSSAPKSR 317
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 1 MDEFGVLTERYGLKPQGKSAPMASSKRSNHDSGSNLK-PSQNGSRSPQHS 49
MDEFGVLTERYGLKPQGKSAPMAS KRS +N SQNGSRSPQHS
Sbjct: 1 MDEFGVLTERYGLKPQGKSAPMASIKRSTPTPPTNSHFQSQNGSRSPQHS 50
>Medtr3g088495.3 | DnaJ domain protein | HC | chr3:40226149-40222189
| 20130731
Length = 485
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 117 VYVDDIFGGMNNKQSVGVDDLLDKIGGLHA-NTKSSNEKGIDSDELIPGFGGSNVSNNGK 175
VYVDDIFGG+N K +VGVDDLL+ IGGLHA N+KSS +K D + + GFGGS+VSNNGK
Sbjct: 106 VYVDDIFGGVNQK-TVGVDDLLNNIGGLHATNSKSSIKKSHDFGDFMSGFGGSSVSNNGK 164
Query: 176 TGFQMNKPHKPAATLKSPPAPANSDPFLVFETSASTGASDSFLDSLEHIXXXXXXXXXXX 235
+ N P KP AT + DPFLVFETS+ST +S+SFLDSLE I
Sbjct: 165 ASIEKNNPRKPTAT-------PHDDPFLVFETSSSTASSESFLDSLEQITKNSSKHTSGS 217
Query: 236 XXXXXXXX--XXXXXXXXXXXXXXXXXXIDELEDFAMGQVHNNASKKANVNTGEIKQNLA 293
IDELE+FA G+V +N S+KAN NTGEIKQN A
Sbjct: 218 SSTSPLLRPPPKPVNASNSINNSSLSSSIDELENFAKGRVQSNPSRKANTNTGEIKQNSA 277
Query: 294 AKTNRDKGAPAARTNKLNDVDDLEXXXXXXXXXXXVPKSR 333
AK +D+GAPAAR N+LN DDLE PKSR
Sbjct: 278 AKPVKDRGAPAARVNQLNGADDLESFFSMGSRSSSAPKSR 317
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 1 MDEFGVLTERYGLKPQGKSAPMASSKRSNHDSGSNLK-PSQNGSRSPQHS 49
MDEFGVLTERYGLKPQGKSAPMAS KRS +N SQNGSRSPQHS
Sbjct: 1 MDEFGVLTERYGLKPQGKSAPMASIKRSTPTPPTNSHFQSQNGSRSPQHS 50
>Medtr3g088495.2 | DnaJ domain protein | HC | chr3:40226149-40220895
| 20130731
Length = 482
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 117 VYVDDIFGGMNNKQSVGVDDLLDKIGGLHA-NTKSSNEKGIDSDELIPGFGGSNVSNNGK 175
VYVDDIFGG+N K +VGVDDLL+ IGGLHA N+KSS +K D + + GFGGS+VSNNGK
Sbjct: 106 VYVDDIFGGVNQK-TVGVDDLLNNIGGLHATNSKSSIKKSHDFGDFMSGFGGSSVSNNGK 164
Query: 176 TGFQMNKPHKPAATLKSPPAPANSDPFLVFETSASTGASDSFLDSLEHIXXXXXXXXXXX 235
+ N P KP AT + DPFLVFETS+ST +S+SFLDSLE I
Sbjct: 165 ASIEKNNPRKPTAT-------PHDDPFLVFETSSSTASSESFLDSLEQITKNSSKHTSGS 217
Query: 236 XXXXXXXX--XXXXXXXXXXXXXXXXXXIDELEDFAMGQVHNNASKKANVNTGEIKQNLA 293
IDELE+FA G+V +N S+KAN NTGEIKQN A
Sbjct: 218 SSTSPLLRPPPKPVNASNSINNSSLSSSIDELENFAKGRVQSNPSRKANTNTGEIKQNSA 277
Query: 294 AKTNRDKGAPAARTNKLNDVDDLEXXXXXXXXXXXVPKSR 333
AK +D+GAPAAR N+LN DDLE PKSR
Sbjct: 278 AKPVKDRGAPAARVNQLNGADDLESFFSMGSRSSSAPKSR 317
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 1 MDEFGVLTERYGLKPQGKSAPMASSKRSNHDSGSNLK-PSQNGSRSPQHS 49
MDEFGVLTERYGLKPQGKSAPMAS KRS +N SQNGSRSPQHS
Sbjct: 1 MDEFGVLTERYGLKPQGKSAPMASIKRSTPTPPTNSHFQSQNGSRSPQHS 50
>Medtr2g087190.1 | Serine/Threonine kinase domain protein | LC |
chr2:36647848-36648505 | 20130731
Length = 184
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 10/61 (16%)
Query: 164 GFGGSNVSNNGKTGFQMNKPHKPAATLKSPPAPANSDPFLVFETSASTGASDSFLDSLEH 223
GFGGS++SNNGK + N P KP A +++DPFLVFE ST +S SFLDSLE
Sbjct: 3 GFGGSSISNNGKASIEKNNPRKPTAI-------SHNDPFLVFE---STTSSKSFLDSLEQ 52
Query: 224 I 224
I
Sbjct: 53 I 53
>Medtr2g087100.1 | hypothetical protein | LC |
chr2:36612660-36614626 | 20130731
Length = 148
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 37/46 (80%), Gaps = 2/46 (4%)
Query: 110 PASTSSSVYVDDIFGGMNNKQSVGVDDLLDKIGGLHA-NTKSSNEK 154
P + S++YVDDIF G++ K +VG+DDLLDKIGGLHA + KSS +K
Sbjct: 11 PTAGLSTIYVDDIFDGVSEK-TVGLDDLLDKIGGLHAPSAKSSIKK 55