Miyakogusa Predicted Gene

Lj1g3v0862940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0862940.1 Non Characterized Hit- tr|D8TS12|D8TS12_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,35.43,1e-18,DUF2372,Proteasome assembly chaperone 3,CUFF.26465.1
         (129 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088470.1 | proteasome assembly chaperone-like protein | H...   230   2e-61

>Medtr3g088470.1 | proteasome assembly chaperone-like protein | HC |
           chr3:40122092-40123870 | 20130731
          Length = 130

 Score =  230 bits (587), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/130 (86%), Positives = 122/130 (93%), Gaps = 1/130 (0%)

Query: 1   MNID-NVSSSAMKFPVSQLNFSLEIKGNKTEIFLSNYEDHFLVVATQIGSMGTILHARKE 59
           MNID NV+S   KFPVSQLNFS+EIKGNKTEI +S+YEDHF+VVATQIG+MGTILHARKE
Sbjct: 1   MNIDDNVASLTPKFPVSQLNFSIEIKGNKTEIIISSYEDHFMVVATQIGAMGTILHARKE 60

Query: 60  EGMSINPTFSVSVLFGKRDEPMLVACARQLIEHMTLSGFSKPLVLSLGLKDHSPETLKGI 119
           EGMSI+PTF+VSVLFGKRDEPMLVACARQLIEHMTLSG SKPLVLSLGLKDHS ETLKGI
Sbjct: 61  EGMSISPTFNVSVLFGKRDEPMLVACARQLIEHMTLSGVSKPLVLSLGLKDHSVETLKGI 120

Query: 120 IAAVIDKRQW 129
           ++AVIDKR W
Sbjct: 121 VSAVIDKRLW 130