Miyakogusa Predicted Gene

Lj1g3v0862930.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0862930.2 CUFF.26439.2
         (264 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088480.1 | SWI/SNF complex protein | HC | chr3:40113660-4...   434   e-122
Medtr4g069830.1 | SWI/SNF complex subunit SWI3D | HC | chr4:2625...   112   4e-25
Medtr4g069830.2 | SWI/SNF complex subunit SWI3D | HC | chr4:2625...   112   4e-25
Medtr3g116120.1 | SWI/SNF complex subunit SWI3B-like protein | H...    76   4e-14
Medtr2g026380.1 | transcriptional adapter ADA2 | HC | chr2:95216...    72   5e-13
Medtr2g026310.1 | transcriptional adapter ADA2a | HC | chr2:9494...    68   9e-12
Medtr5g085170.1 | SWI/SNF complex subunit SWI3B-like protein | H...    67   2e-11
Medtr3g081360.1 | transcriptional adapter ADA2a | HC | chr3:3684...    66   4e-11
Medtr3g081380.1 | transcriptional adapter ADA2 | HC | chr3:36860...    66   4e-11
Medtr3g099000.2 | SWI/SNF complex protein | HC | chr3:45370551-4...    64   1e-10
Medtr3g099000.1 | SWI/SNF complex protein | HC | chr3:45370551-4...    64   1e-10
Medtr3g082790.1 | transcriptional adapter ADA2a | HC | chr3:3737...    51   1e-06
Medtr3g082790.2 | transcriptional adapter ADA2a | HC | chr3:3737...    50   2e-06
Medtr3g082790.3 | transcriptional adapter ADA2a | HC | chr3:3737...    50   2e-06

>Medtr3g088480.1 | SWI/SNF complex protein | HC |
           chr3:40113660-40120664 | 20130731
          Length = 782

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/264 (79%), Positives = 226/264 (85%), Gaps = 2/264 (0%)

Query: 1   MHNADSPDLDDRIREHLSENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSS 60
           MH+ D PDLD RIREHLSENHCNYCS PLP VYYQSQKEVDILLCTDCFHDG+FV+GHSS
Sbjct: 318 MHSGDVPDLDSRIREHLSENHCNYCSCPLPAVYYQSQKEVDILLCTDCFHDGKFVVGHSS 377

Query: 61  IDFMRVDSTRDYGELDGESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLR 120
           IDF+RVDS+RDYGELD ESWTDQETLLLLEAMEIY+ENWNEIAEHVGTKSKAQCILHFLR
Sbjct: 378 IDFLRVDSSRDYGELDVESWTDQETLLLLEAMEIYHENWNEIAEHVGTKSKAQCILHFLR 437

Query: 121 LPMEDGKLENINVPSMSLSSSVMNRDDNGRLHHHLNGDSAGPIHQSRESDSRLPFANSGN 180
           LPMEDGKLENINVPSMS+SS+VMNRDDNGR HH+ NGDSAGP+H  R+SDSRLPFANSGN
Sbjct: 438 LPMEDGKLENINVPSMSVSSNVMNRDDNGRSHHYSNGDSAGPVHHIRDSDSRLPFANSGN 497

Query: 181 PVMALVSFLASAVGPRXXXXXXXXXXXXXXEDGSGSTSQTEAPGHDNRTNAESVHARDGG 240
           PVMALV+FLASAVGPR              ED +G  SQTE+ GHDNRTN E+ H+RDGG
Sbjct: 498 PVMALVAFLASAVGPRVAASCAHAALSVMSEDNTG--SQTESSGHDNRTNPENTHSRDGG 555

Query: 241 PHGETANSINHNEDKAKMRSTRGQ 264
             GETA S NHNEDKAK   +R Q
Sbjct: 556 SRGETAISNNHNEDKAKAPCSREQ 579


>Medtr4g069830.1 | SWI/SNF complex subunit SWI3D | HC |
           chr4:26258593-26267090 | 20130731
          Length = 1041

 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)

Query: 19  ENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGE 78
           E HCN CS       Y  QK+ D  LCTDCF++ +F  G S +DF+ ++     G   G+
Sbjct: 304 EYHCNSCSGDCSRKRYHCQKQADFDLCTDCFNNRKFGTGMSPLDFILMEPAEAAGVSSGK 363

Query: 79  SWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDG 126
            WTDQETLLLLEA+E+Y ENW EIAEHVGTKSKAQCILHF+++P+ED 
Sbjct: 364 -WTDQETLLLLEALELYKENWTEIAEHVGTKSKAQCILHFVQMPIEDA 410


>Medtr4g069830.2 | SWI/SNF complex subunit SWI3D | HC |
           chr4:26258609-26267090 | 20130731
          Length = 1039

 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 76/108 (70%), Gaps = 1/108 (0%)

Query: 19  ENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGE 78
           E HCN CS       Y  QK+ D  LCTDCF++ +F  G S +DF+ ++     G   G+
Sbjct: 304 EYHCNSCSGDCSRKRYHCQKQADFDLCTDCFNNRKFGTGMSPLDFILMEPAEAAGVSSGK 363

Query: 79  SWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDG 126
            WTDQETLLLLEA+E+Y ENW EIAEHVGTKSKAQCILHF+++P+ED 
Sbjct: 364 -WTDQETLLLLEALELYKENWTEIAEHVGTKSKAQCILHFVQMPIEDA 410


>Medtr3g116120.1 | SWI/SNF complex subunit SWI3B-like protein | HC |
           chr3:54294108-54291302 | 20130731
          Length = 483

 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 13/176 (7%)

Query: 22  CNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGESWT 81
           C+ C     +  +  +K  ++ LC  CF  G + IG S+ +F RV+      E     WT
Sbjct: 180 CSGCKNLCVMACFACEKN-NMTLCARCFIRGNYRIGMSNTEFKRVE----ISEETKNEWT 234

Query: 82  DQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSS 141
           ++ETL LLEA+  + ++W  +A  V  ++  +C+  FL LP  D  L   +    S S+ 
Sbjct: 235 EKETLNLLEAITNFGDDWKRVAHQVVGRTDKECVARFLELPFGDQFLHYPH----SESAP 290

Query: 142 VMNRDDNGRLHHHLNGDSAGPIHQSRESDSRL---PFANSGNPVMALVSFLASAVG 194
            ++ D + +L   +  +       S +S  R+   P A++ NP+MA  +FL++  G
Sbjct: 291 CID-DGSDQLKPPVAAECESETVPSDKSSKRMCLTPLADASNPIMAQAAFLSALAG 345


>Medtr2g026380.1 | transcriptional adapter ADA2 | HC |
           chr2:9521699-9525767 | 20130731
          Length = 495

 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 21  HCNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGES 79
           HCNYC + +  V+  +     D  LC +CF  G  +  H S    RV +   +  L    
Sbjct: 49  HCNYCKKNITGVIRIKCAVCPDFDLCVECFSVGAELTPHKSNHDYRVMNKLSF-PLVSPD 107

Query: 80  WTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHFLRL 121
           W   E +L+LE +E+Y  ENW E+AEHVGTK+K  C+ H+++ 
Sbjct: 108 WNADEEMLILEGIEMYGLENWAEVAEHVGTKNKEACMEHYMKF 150


>Medtr2g026310.1 | transcriptional adapter ADA2a | HC |
           chr2:9494097-9499023 | 20130731
          Length = 551

 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 21  HCNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGES 79
           HCNYC++ +   +  +  K  D  LC +CF  G  V  H S    RV    ++       
Sbjct: 49  HCNYCNKDITGKIRIKCAKCPDFDLCIECFSVGAEVTPHKSNHNYRVMDNLNF-HFICPG 107

Query: 80  WTDQETLLLLEAMEIYNE-NWNEIAEHVGTKSKAQCILHF 118
           W   + +LLLE +E+Y   NW E+AEHVGTK+K  CI H+
Sbjct: 108 WHADDEILLLEGIEMYGMGNWAEVAEHVGTKNKEACIEHY 147


>Medtr5g085170.1 | SWI/SNF complex subunit SWI3B-like protein | HC |
           chr5:36752674-36753975 | 20130731
          Length = 433

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 31/154 (20%)

Query: 44  LCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGESWTDQETLLLLEAMEIYNENWNEIA 103
           LC  CF  G + IG S+  F RV+      E     WT++ETL LLEA+  + ++W  ++
Sbjct: 170 LCARCFIRGNYRIGMSNTKFKRVE----ISEETKNEWTEEETLNLLEAITNFGDDWKRVS 225

Query: 104 EHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSSVMNRDDNGRLHHHLNGDSAGPI 163
             V  ++  +C+  FL LP  D                        +L   ++ +    I
Sbjct: 226 HQVVGRTDKECVARFLELPFGD------------------------QLKPPVDAEWESEI 261

Query: 164 HQSRESDSRL---PFANSGNPVMALVSFLASAVG 194
             S +S  R+   P  ++ NP+MA  +FL++  G
Sbjct: 262 VGSGKSSKRMCLTPLNDAINPIMAQAAFLSALAG 295


>Medtr3g081360.1 | transcriptional adapter ADA2a | HC |
           chr3:36848839-36856562 | 20130731
          Length = 513

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 21  HCNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGES 79
           HCNYC + +   ++ +     D  LC +CF  G  +  H S    RV  +  +  L    
Sbjct: 35  HCNYCKKNISGKIHIKCAVCQDFDLCIECFFVGAELTPHKSNHPYRVMDSLSF-PLTSPD 93

Query: 80  WTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 118
           W+  E  LL+EA+++Y   NWN +AE+VGTKSK+QCI H+
Sbjct: 94  WSAGEEKLLIEAIDMYGFGNWNGVAENVGTKSKSQCIDHY 133


>Medtr3g081380.1 | transcriptional adapter ADA2 | HC |
           chr3:36860711-36862546 | 20130731
          Length = 189

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 52/104 (50%), Gaps = 3/104 (2%)

Query: 17  LSENHCNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGEL 75
           L    CNYC   +    + +     D  LC  CF  G  V  H S    RV     +  L
Sbjct: 44  LYRCKCNYCKTDISGKAHIKCAVCQDFNLCVKCFSVGAEVTPHKSNHPYRVMEDLSF-PL 102

Query: 76  DGESWTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 118
               W+  E  LLLEA+++Y  ENWN +AEHVGTKSK +CI H+
Sbjct: 103 TCPDWSAHEERLLLEALDMYGFENWNGVAEHVGTKSKPECIDHY 146


>Medtr3g099000.2 | SWI/SNF complex protein | HC |
           chr3:45370551-45376366 | 20130731
          Length = 540

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 6/138 (4%)

Query: 11  DRIREHLSENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTR 70
           D IR    E +C  C       +Y+S K+ + ++CT CF +G +    S  DF +++ + 
Sbjct: 182 DLIRRK--EVNCGNCGDKCGSGHYRSTKD-NFIICTKCFKNGNYGEKRSMEDF-KLNESS 237

Query: 71  DYGELDGESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLEN 130
           +        WT+ ETLLLLE++  + ++W  +A+ V TK+K +CI   + LP  +  L +
Sbjct: 238 EISANHSAVWTEGETLLLLESVLKHGDDWELVAQSVRTKTKLECISKLIELPFGELMLAS 297

Query: 131 I--NVPSMSLSSSVMNRD 146
           +  N  S S++  V NR+
Sbjct: 298 VRRNDNSNSVTGIVNNRN 315


>Medtr3g099000.1 | SWI/SNF complex protein | HC |
           chr3:45370551-45376390 | 20130731
          Length = 540

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 6/138 (4%)

Query: 11  DRIREHLSENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTR 70
           D IR    E +C  C       +Y+S K+ + ++CT CF +G +    S  DF +++ + 
Sbjct: 182 DLIRRK--EVNCGNCGDKCGSGHYRSTKD-NFIICTKCFKNGNYGEKRSMEDF-KLNESS 237

Query: 71  DYGELDGESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLEN 130
           +        WT+ ETLLLLE++  + ++W  +A+ V TK+K +CI   + LP  +  L +
Sbjct: 238 EISANHSAVWTEGETLLLLESVLKHGDDWELVAQSVRTKTKLECISKLIELPFGELMLAS 297

Query: 131 I--NVPSMSLSSSVMNRD 146
           +  N  S S++  V NR+
Sbjct: 298 VRRNDNSNSVTGIVNNRN 315


>Medtr3g082790.1 | transcriptional adapter ADA2a | HC |
           chr3:37372759-37365661 | 20130731
          Length = 565

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 3/104 (2%)

Query: 17  LSENHCNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGEL 75
           +S  HCNYC++ +   +  +     D  LC +CF  G  +  H S    RV     +  L
Sbjct: 49  VSLYHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGVELTPHKSNHPYRVMDNLSF-PL 107

Query: 76  DGESWTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 118
               W+ +E +LLLEA+++Y   NWN++A+++GTKSK+QCI H+
Sbjct: 108 ICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHY 151


>Medtr3g082790.2 | transcriptional adapter ADA2a | HC |
           chr3:37372759-37365661 | 20130731
          Length = 525

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 3/104 (2%)

Query: 17  LSENHCNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGEL 75
           +S  HCNYC++ +   +  +     D  LC +CF  G  +  H S    RV     +  L
Sbjct: 9   VSLYHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGVELTPHKSNHPYRVMDNLSFP-L 67

Query: 76  DGESWTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 118
               W+ +E +LLLEA+++Y   NWN++A+++GTKSK+QCI H+
Sbjct: 68  ICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHY 111


>Medtr3g082790.3 | transcriptional adapter ADA2a | HC |
           chr3:37372759-37365661 | 20130731
          Length = 525

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 3/104 (2%)

Query: 17  LSENHCNYCSRPLP-VVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGEL 75
           +S  HCNYC++ +   +  +     D  LC +CF  G  +  H S    RV     +  L
Sbjct: 9   VSLYHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGVELTPHKSNHPYRVMDNLSFP-L 67

Query: 76  DGESWTDQETLLLLEAMEIYN-ENWNEIAEHVGTKSKAQCILHF 118
               W+ +E +LLLEA+++Y   NWN++A+++GTKSK+QCI H+
Sbjct: 68  ICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHY 111