Miyakogusa Predicted Gene

Lj1g3v0862930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0862930.1 CUFF.26439.1
         (285 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088480.1 | SWI/SNF complex protein | HC | chr3:40113660-4...   375   e-104
Medtr4g069830.1 | SWI/SNF complex subunit SWI3D | HC | chr4:2625...    54   2e-07
Medtr4g069830.2 | SWI/SNF complex subunit SWI3D | HC | chr4:2625...    53   3e-07
Medtr3g099000.2 | SWI/SNF complex protein | HC | chr3:45370551-4...    53   4e-07
Medtr3g099000.1 | SWI/SNF complex protein | HC | chr3:45370551-4...    53   4e-07

>Medtr3g088480.1 | SWI/SNF complex protein | HC |
           chr3:40113660-40120664 | 20130731
          Length = 782

 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/287 (68%), Positives = 210/287 (73%), Gaps = 6/287 (2%)

Query: 1   MALVSFLASAVGPRXXXXXXXXXXXXXXEDGSGSTSQTEAPGHDNRTNAESVHARDGGPH 60
           MALV+FLASAVGPR              ED +GS  QTE+ GHDNRTN E+ H+RDGG  
Sbjct: 500 MALVAFLASAVGPRVAASCAHAALSVMSEDNTGS--QTESSGHDNRTNPENTHSRDGGSR 557

Query: 61  GETANSINHNEDKAKMRSTRGQSEGRTTPLSAEKVXXXXXXXXXXXXXXXXLFADHEERE 120
           GETA S NHNEDKAK   +R QSEGRTTPLSAEKV                LFADHEERE
Sbjct: 558 GETAISNNHNEDKAKAPCSREQSEGRTTPLSAEKVKDAAKAGLSAAAMKAKLFADHEERE 617

Query: 121 IQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRIISAHFGTAG 180
           IQRLCANI+NHQLKRLELKLKQFAEIETLLMKECEQVERAKQRF AER+R+ISA FGTAG
Sbjct: 618 IQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISARFGTAG 677

Query: 181 ATPPMNASGVGPSVASNNGNNRXXXXXXXXX--XXXGYGNSQPVHPHMSFAPRPSMFGLG 238
            TP MNASGVGPS+AS NGNNR              GYGN+QP+HPHMSFA RPSMFGLG
Sbjct: 678 TTPAMNASGVGPSMAS-NGNNRQQMISASPSQPSISGYGNNQPIHPHMSFAQRPSMFGLG 736

Query: 239 QRLPLSMIXXXXXXXXXTGMFNAPSNVQSSTNHPLLRPVSGTNSGLG 285
           QRLPLSMI           MFNAPSNVQ  TNHPLLRPVSGTNSGLG
Sbjct: 737 QRLPLSMIQQSQSASSAP-MFNAPSNVQPGTNHPLLRPVSGTNSGLG 782


>Medtr4g069830.1 | SWI/SNF complex subunit SWI3D | HC |
           chr4:26258593-26267090 | 20130731
          Length = 1041

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 116 HEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRIISAH 175
            EE +I+ L + ++  QL +LE KL  F ++E L+M+  E ++R++ +   ER+ IIS+ 
Sbjct: 901 QEEDQIRELTSALIEKQLHKLETKLAFFNDMEHLVMRVKELLDRSRHKLYHERAMIISSR 960

Query: 176 FGTAGATPPMNASGVGPSVASN 197
            G     P  ++ GV PS+ +N
Sbjct: 961 LG----VPASSSRGVPPSIPTN 978


>Medtr4g069830.2 | SWI/SNF complex subunit SWI3D | HC |
           chr4:26258609-26267090 | 20130731
          Length = 1039

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 116 HEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRIISAH 175
            EE +I+ L + ++  QL +LE KL  F ++E L+M+  E ++R++ +   ER+ IIS+ 
Sbjct: 899 QEEDQIRELTSALIEKQLHKLETKLAFFNDMEHLVMRVKELLDRSRHKLYHERAMIISSR 958

Query: 176 FGTAGATPPMNASGVGPSVASN 197
            G     P  ++ GV PS+ +N
Sbjct: 959 LG----VPASSSRGVPPSIPTN 976


>Medtr3g099000.2 | SWI/SNF complex protein | HC |
           chr3:45370551-45376366 | 20130731
          Length = 540

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 112 LFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRI 171
           L AD E+REI+ L A I+  Q+++L+ K+K F E+E L+ KE  ++E  K     ER  +
Sbjct: 461 LLADQEDREIEHLVATIIEAQVEKLQQKVKHFDELELLMEKEHAEMEELKDSILTERIDV 520

Query: 172 ISAHFGTAGA 181
           +   F +  A
Sbjct: 521 LRKTFKSGVA 530


>Medtr3g099000.1 | SWI/SNF complex protein | HC |
           chr3:45370551-45376390 | 20130731
          Length = 540

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 112 LFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRI 171
           L AD E+REI+ L A I+  Q+++L+ K+K F E+E L+ KE  ++E  K     ER  +
Sbjct: 461 LLADQEDREIEHLVATIIEAQVEKLQQKVKHFDELELLMEKEHAEMEELKDSILTERIDV 520

Query: 172 ISAHFGTAGA 181
           +   F +  A
Sbjct: 521 LRKTFKSGVA 530