Miyakogusa Predicted Gene

Lj1g3v0861750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0861750.1 tr|B1XIK5|B1XIK5_SYNP2 Iojap-related protein
OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR,44.76,2e-18,iojap_ybeB: iojap-like ribosome-associated
protein,Ribosome-associated, Iojap-like; SUBFAMILY NOT
NA,NODE_39953_length_1084_cov_115.934502.path1.1
         (243 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g069470.1 | ribosome silencing factor | HC | chr2:28894562...   387   e-108

>Medtr2g069470.1 | ribosome silencing factor | HC |
           chr2:28894562-28897670 | 20130731
          Length = 249

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/243 (79%), Positives = 211/243 (86%), Gaps = 6/243 (2%)

Query: 1   MPPSTTLLSLAGASASVPASFPGELGHLETKCSPKPRKLFTCSCIKGLPLSKHNINGFNL 60
           M PS+TLLSLAGA A  P SF GE+GH +T  S KPRK+FT  C K LPL +H+IN  NL
Sbjct: 1   MIPSSTLLSLAGAFA--PVSFSGEMGHPQTNSSSKPRKVFTSFCKKALPLQRHSINSLNL 58

Query: 61  KXXXXXNSLLSFALGKEADDRFLSDVSKDTDDMYDELLNNYGKVVYTRKDRKPASAEVDD 120
           K     NSLLSFA GKEA+D   SDV +DTDDMYDELL+NYG+VVY RKD+KPASAE+DD
Sbjct: 59  KRR---NSLLSFAFGKEANDNSFSDVGEDTDDMYDELLSNYGQVVYKRKDQKPASAEIDD 115

Query: 121 DAESLSFAVELATIASEVKAGDIRVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRMRDRA 180
           D+ESLSFAVELAT+ASEVKAGDI+VLFVKPLVYWTRFFIIATAFSRPQIDAIGSR+RDRA
Sbjct: 116 DSESLSFAVELATVASEVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDRA 175

Query: 181 EKKYGKIPTGDARPNSWTLLDFGDVVVHIFLPPQRAFYNLEEFYGNATPVELPFENQPPP 240
           EKKYGKIP GD +PNSWTLLDFGDVVVH+FLPPQRAFYNLEEFYGNAT VELPFENQ PP
Sbjct: 176 EKKYGKIPNGDLKPNSWTLLDFGDVVVHLFLPPQRAFYNLEEFYGNATSVELPFENQ-PP 234

Query: 241 FRS 243
           FR+
Sbjct: 235 FRN 237