Miyakogusa Predicted Gene
- Lj1g3v0827060.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0827060.1 Non Characterized Hit- tr|I1KAA7|I1KAA7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.7568 PE=,88.98,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; DNA polymerase III
clamp loader subunits,,CUFF.26380.1
(372 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g088120.1 | replication factor C subunit 5 | HC | chr3:399... 629 e-180
Medtr3g088120.2 | replication factor C subunit 5 | HC | chr3:399... 547 e-156
Medtr4g102860.1 | replication factor C subunit 2 | HC | chr4:426... 216 4e-56
Medtr3g088380.1 | replication factor C subunit 2 | HC | chr3:401... 210 2e-54
Medtr3g088380.2 | replication factor C subunit 2 | HC | chr3:401... 210 2e-54
Medtr6g471010.1 | DNA replication factor C complex subunit 3 | H... 127 1e-29
Medtr6g471010.2 | DNA replication factor C complex subunit 3 | H... 127 1e-29
Medtr6g027590.1 | DNA replication factor C complex subunit 3 | H... 126 4e-29
Medtr5g020810.1 | replication factor C, putative | HC | chr5:796... 78 1e-14
Medtr3g118160.1 | replication factor C subunit, putative | HC | ... 75 1e-13
Medtr4g104350.1 | DNA polymerase III subunit gamma/tau | HC | ch... 65 8e-11
Medtr4g104350.2 | DNA polymerase III subunit gamma/tau | HC | ch... 65 8e-11
Medtr5g098850.1 | AAA family ATPase | HC | chr5:43286117-4328397... 64 3e-10
Medtr4g050180.1 | replication factor C1 | HC | chr4:17764475-177... 64 3e-10
Medtr4g050180.2 | replication factor C1 | HC | chr4:17764874-177... 64 3e-10
Medtr2g017980.1 | DNA polymerase III subunit gamma/tau | HC | ch... 62 1e-09
Medtr2g017980.2 | DNA polymerase III subunit gamma/tau | HC | ch... 62 1e-09
Medtr4g134530.1 | DNA polymerase III subunit gamma/tau | HC | ch... 62 1e-09
Medtr4g102700.1 | replication factor C subunit | HC | chr4:42565... 58 1e-08
>Medtr3g088120.1 | replication factor C subunit 5 | HC |
chr3:39964069-39957680 | 20130731
Length = 355
Score = 629 bits (1623), Expect = e-180, Method: Compositional matrix adjust.
Identities = 306/353 (86%), Positives = 323/353 (91%), Gaps = 9/353 (2%)
Query: 4 AEAIHPMEIDGDDDLTYSARPDKGKSVLVAGNPPGGQKAIPWVEKYRPQSLDDVAAHRDI 63
AE + M+ID DKGK+V+ AGNP G KA WVEKYRPQSLDDVAAHRDI
Sbjct: 2 AEETYAMDID---------VTDKGKTVIAAGNPSFGGKASLWVEKYRPQSLDDVAAHRDI 52
Query: 64 VDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYRNMILELNASDDRGIGVV 123
VDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY NMILELNASDDRGI VV
Sbjct: 53 VDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 112
Query: 124 REQIQNFASTQSLSFGVKTSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHV 183
R+QIQ+FASTQSLSFGVK SVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHV
Sbjct: 113 RQQIQDFASTQSLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHV 172
Query: 184 NKIIPALQSRCTRFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALN 243
NKIIPALQSRCTRFRFAPLDA HV+ERLKHVI AE LDVQDSGL ALVRLSNGDMRKALN
Sbjct: 173 NKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALN 232
Query: 244 ILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEIKTRKGLAVI 303
ILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQ+++SFKRIY++KTRKGLA+I
Sbjct: 233 ILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSESFKRIYDMKTRKGLALI 292
Query: 304 DIVREVTMFVFKIKMPPSVRVQLMTDLADIEYRLSFGCNDKLQLGSVISSFTR 356
DIVREVTMFVFKI MP +VRVQL+ DLADIEYRLSFGCNDKLQLGSV++SFTR
Sbjct: 293 DIVREVTMFVFKINMPSAVRVQLVNDLADIEYRLSFGCNDKLQLGSVVASFTR 345
>Medtr3g088120.2 | replication factor C subunit 5 | HC |
chr3:39964069-39959228 | 20130731
Length = 300
Score = 547 bits (1410), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/308 (87%), Positives = 281/308 (91%), Gaps = 9/308 (2%)
Query: 4 AEAIHPMEIDGDDDLTYSARPDKGKSVLVAGNPPGGQKAIPWVEKYRPQSLDDVAAHRDI 63
AE + M+ID DKGK+V+ AGNP G KA WVEKYRPQSLDDVAAHRDI
Sbjct: 2 AEETYAMDID---------VTDKGKTVIAAGNPSFGGKASLWVEKYRPQSLDDVAAHRDI 52
Query: 64 VDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYRNMILELNASDDRGIGVV 123
VDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQY NMILELNASDDRGI VV
Sbjct: 53 VDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 112
Query: 124 REQIQNFASTQSLSFGVKTSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHV 183
R+QIQ+FASTQSLSFGVK SVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHV
Sbjct: 113 RQQIQDFASTQSLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHV 172
Query: 184 NKIIPALQSRCTRFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALN 243
NKIIPALQSRCTRFRFAPLDA HV+ERLKHVI AE LDVQDSGL ALVRLSNGDMRKALN
Sbjct: 173 NKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALN 232
Query: 244 ILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEIKTRKGLAVI 303
ILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQ+++SFKRIY++KTRKGLA+I
Sbjct: 233 ILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSESFKRIYDMKTRKGLALI 292
Query: 304 DIVREVTM 311
DIVREVTM
Sbjct: 293 DIVREVTM 300
>Medtr4g102860.1 | replication factor C subunit 2 | HC |
chr4:42642450-42637960 | 20130731
Length = 333
Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 185/320 (57%), Gaps = 11/320 (3%)
Query: 43 IPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG 102
+PWVEKYRP + D+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 15 VPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 74
Query: 103 AQYRNMILELNASDDRGIGVVREQIQNFASTQ-SLSFGVKTSVKLVLLDEADAMTKDAQF 161
YR +LELNASDDRGI VVR +I+ FA + +L G K+V+LDEAD+MT AQ
Sbjct: 75 PNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH---KVVILDEADSMTSGAQQ 131
Query: 162 ALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHVSERLKHVIKAEGLD 221
ALRR +E Y+ STRFAL CN +KII +QSRC RF+ L + RL V++AE +
Sbjct: 132 ALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVP 191
Query: 222 VQDSGLEALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLN 281
GLEA++ ++GDMR+ LN LQ+T Q + + V+ P P ++ + ++
Sbjct: 192 YVPEGLEAIIFTADGDMRQGLNNLQATFSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIE 251
Query: 282 EQFADS---FKRIYEIKTRKGLAVIDIVREVTMFVFKIKMPPSVRVQLMTDLADIEYRLS 338
F ++ K++Y++ G + DI+ + + M ++++ M + R+
Sbjct: 252 GNFDEACSGLKQLYDL----GYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRIC 307
Query: 339 FGCNDKLQLGSVISSFTRAR 358
G LQ+ +++ F R
Sbjct: 308 DGVGSYLQMCGLLAKFALVR 327
>Medtr3g088380.1 | replication factor C subunit 2 | HC |
chr3:40162477-40157119 | 20130731
Length = 339
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 142/214 (66%), Gaps = 6/214 (2%)
Query: 40 QKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARK 99
Q PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +
Sbjct: 6 QSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQ 65
Query: 100 LYGAQ-YRNMILELNASDDRGIGVVREQIQNFASTQSLSFGVKTSV-----KLVLLDEAD 153
L+G + Y++ +LELNASDDRGI VVR +I++FA+ + K K+++LDEAD
Sbjct: 66 LFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDEAD 125
Query: 154 AMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHVSERLKH 213
+MT+DAQ ALRR +E Y+K TRF ICN++++II L SRC +FRF PL +S R+ +
Sbjct: 126 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVY 185
Query: 214 VIKAEGLDVQDSGLEALVRLSNGDMRKALNILQS 247
+ K EG+ + GL L +S GD+R+A+ LQS
Sbjct: 186 ICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQS 219
>Medtr3g088380.2 | replication factor C subunit 2 | HC |
chr3:40162519-40157119 | 20130731
Length = 339
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 142/214 (66%), Gaps = 6/214 (2%)
Query: 40 QKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARK 99
Q PWVEKYRP+ + DVA ++V + PH+L YGPPGTGKT+T LA+A +
Sbjct: 6 QSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQ 65
Query: 100 LYGAQ-YRNMILELNASDDRGIGVVREQIQNFASTQSLSFGVKTSV-----KLVLLDEAD 153
L+G + Y++ +LELNASDDRGI VVR +I++FA+ + K K+++LDEAD
Sbjct: 66 LFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDEAD 125
Query: 154 AMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHVSERLKH 213
+MT+DAQ ALRR +E Y+K TRF ICN++++II L SRC +FRF PL +S R+ +
Sbjct: 126 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVY 185
Query: 214 VIKAEGLDVQDSGLEALVRLSNGDMRKALNILQS 247
+ K EG+ + GL L +S GD+R+A+ LQS
Sbjct: 186 ICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQS 219
>Medtr6g471010.1 | DNA replication factor C complex subunit 3 | HC |
chr6:25412156-25405812 | 20130731
Length = 354
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 143/284 (50%), Gaps = 38/284 (13%)
Query: 45 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 102
WV+KYRP++LD H DI + +L TE+ PHLL YGP G GK + I+A+ R+++G
Sbjct: 3 WVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPG 62
Query: 103 --------------AQYRNMILELNA----------SDDRGIG---VVREQIQNFASTQS 135
A R++ LEL D G +V+E I+ A +
Sbjct: 63 AEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRP 122
Query: 136 LSFGVKTSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCT 195
+ K K+++L++ D ++++AQ +LRR +EKY+ R L CN +++ A++SRC
Sbjct: 123 IDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCL 182
Query: 196 RFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALNILQSTHMASQQI 255
R + E L+ + K EGL + S + SN ++R+A+ ++ +
Sbjct: 183 NVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYPF 242
Query: 256 TEEAVYLCTGNPLPKD--IEQISYWLLNEQFADSFKRIYEIKTR 297
T++ T P+ + I +I+ ++ EQ S KR+++++ +
Sbjct: 243 TDKQ----TIPPMDWEEYISEIASDIMKEQ---SPKRLFQVRGK 279
>Medtr6g471010.2 | DNA replication factor C complex subunit 3 | HC |
chr6:25412144-25405881 | 20130731
Length = 354
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 143/284 (50%), Gaps = 38/284 (13%)
Query: 45 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 102
WV+KYRP++LD H DI + +L TE+ PHLL YGP G GK + I+A+ R+++G
Sbjct: 3 WVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFGPG 62
Query: 103 --------------AQYRNMILELNA----------SDDRGIG---VVREQIQNFASTQS 135
A R++ LEL D G +V+E I+ A +
Sbjct: 63 AEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRP 122
Query: 136 LSFGVKTSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCT 195
+ K K+++L++ D ++++AQ +LRR +EKY+ R L CN +++ A++SRC
Sbjct: 123 IDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSRCL 182
Query: 196 RFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALNILQSTHMASQQI 255
R + E L+ + K EGL + S + SN ++R+A+ ++ +
Sbjct: 183 NVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAARIAEKSNRNLRRAILSFETCRVQQYPF 242
Query: 256 TEEAVYLCTGNPLPKD--IEQISYWLLNEQFADSFKRIYEIKTR 297
T++ T P+ + I +I+ ++ EQ S KR+++++ +
Sbjct: 243 TDKQ----TIPPMDWEEYISEIASDIMKEQ---SPKRLFQVRGK 279
>Medtr6g027590.1 | DNA replication factor C complex subunit 3 | HC |
chr6:9558620-9564430 | 20130731
Length = 354
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 169/346 (48%), Gaps = 43/346 (12%)
Query: 45 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYG-- 102
WV+KYRP++LD+ H D + +L +E+ PHLL YGP G+GK + I+A+ R+++G
Sbjct: 3 WVDKYRPKTLDNALVHNDTAQNLKKLVSEHDCPHLLFYGPSGSGKKTLIMALLRQMFGPG 62
Query: 103 --------------AQYRNMILELNA----------SDDRGIG---VVREQIQNFASTQS 135
A R++ LEL D G +V+E I+ A +
Sbjct: 63 AEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKNRP 122
Query: 136 LSFGVKTSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCT 195
+ K K+++L++ D ++++AQ +LRR +EKY+ R L CN +++ A++SRC
Sbjct: 123 IDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCL 182
Query: 196 RFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALNILQSTHMASQQI 255
R + E L+ + K EGL + S + SN ++R+A+ ++ +
Sbjct: 183 NVRINAPSEEQIVEVLQFIGKKEGLQLPSSFAARIAEKSNRNLRRAILSFETCRVQQYPF 242
Query: 256 TEEAVYLCTGNPLPKD--IEQISYWLLNEQFADSFKRIYEIKTRKGLAVID-----IVRE 308
T++ T P+ + I +I+ ++ EQ S KR+++++ + +I+ I+ +
Sbjct: 243 TDKQ----TIPPMDWEEYISEIASDIMKEQ---SPKRLFQVRGKLYELLINCIPPGIILK 295
Query: 309 VTMFVFKIKMPPSVRVQLMTDLADIEYRLSFGCNDKLQLGSVISSF 354
++ K+ ++ ++ A E+R+ G + + ++ F
Sbjct: 296 RLLYELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKF 341
>Medtr5g020810.1 | replication factor C, putative | HC |
chr5:7969752-7973533 | 20130731
Length = 757
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 135/293 (46%), Gaps = 37/293 (12%)
Query: 41 KAIP--WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVAR 98
++IP W +K++P SLD ++ + L ++ PH+LL GP G+GK +A R
Sbjct: 408 ESIPQLWADKHKPASLDGFICNKQEAQLLKELVSQGSCPHILLKGPSGSGKRDLAMAFLR 467
Query: 99 KLYG-----------------AQYRNMILELNASDDRG---IGVVREQIQNFASTQSLS- 137
++YG + +M + +N+ + +G+++E +A T +S
Sbjct: 468 EIYGDACCNDKRTMKVSVPITSSSHHMEVNVNSEPNAKYALMGLIKEISNIYAITPEVSN 527
Query: 138 FGVKTSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRF 197
K+ K++++ + + ++ Q ++ +I++Y+ + L C II +++ RF
Sbjct: 528 VNFKSDYKVIIIYDVEKAAENIQHLIKWIIDRYSDICKLVLCCEDDENIIAQVKN---RF 584
Query: 198 RFAPLDAAH---VSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALNILQSTHMASQQ 254
+ +DA + E L + E +D+ + + S ++R+A+ L++ +
Sbjct: 585 KVINVDAPQTHEIIEVLTQIANKEEMDLSMNFAMKIATKSKQNLREAILALEACRAHNYP 644
Query: 255 ITEEAVYLCTGNPLPKDIEQISYWLLNEQFAD-SFKRIYEIKTRKGLAVIDIV 306
+EE P+P E+I + E D SF R+ I+ + + ++D V
Sbjct: 645 FSEE-------QPIPVGWEKIVIEVATEILTDPSFSRLLSIRGKFQMLLLDFV 690
>Medtr3g118160.1 | replication factor C subunit, putative | HC |
chr3:55299989-55307292 | 20130731
Length = 800
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 144/303 (47%), Gaps = 42/303 (13%)
Query: 45 WVEKYRPQSLDDVAAHRDIVDTIDRLTTEN-RLPHLLLYGPPGTGKTSTILAVARKLYGA 103
W KY+P+ L D +RD + L H + GPP GK S I A+ R+++GA
Sbjct: 422 WATKYQPKILADFICNRDKALQLKALVKGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGA 481
Query: 104 -------QYRNMIL-------------------ELNASDDRGI--GVVREQI-QNFASTQ 134
+Y++ L E+N S+ +G V+ E + +
Sbjct: 482 DGVQVTEEYKDFNLKGEMVENLKLRVQKSLHHVEVNLSEAKGYEKNVIVELFKETYGKVI 541
Query: 135 SLSFGVK-TSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSR 193
+ S + + ++L EA+ ++ ++ ++ ++EKY + C+ +++ P +QS
Sbjct: 542 NSSLPCSPENCQAIILYEAEKLSLESVLYIKWLVEKYKGCNKLFFCCSDESRLQP-IQSY 600
Query: 194 CTRFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALNILQSTHMASQ 253
CT R + + + L+++++ EG+ + ++++V S ++R+A+ L++T+
Sbjct: 601 CTTVRLSSPSTQQIVKILEYIVQEEGIKLSHESIKSIVLRSKNNLRQAIRSLEATYRNKN 660
Query: 254 QITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEIKTR-KGLAVIDIVREVTMF 312
+ ++ + L TG DI I+ ++ EQ S +++Y I+ + + L + D+ + F
Sbjct: 661 ALNDDDLVL-TG--WEDDILNIARNIITEQ---SPRQLYAIRKKLQSLMIHDVPPD---F 711
Query: 313 VFK 315
++K
Sbjct: 712 IYK 714
>Medtr4g104350.1 | DNA polymerase III subunit gamma/tau | HC |
chr4:43113306-43108849 | 20130731
Length = 935
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 101/234 (43%), Gaps = 16/234 (6%)
Query: 48 KYRPQSLDDVAAHRDIVDTIDRLTTENRLPHL-LLYGPPGTGKTST--ILAVARKLYGAQ 104
K+RP+S +D+ + ++ + R+ L +GP GTGKTS I A A +
Sbjct: 283 KFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCISLE 342
Query: 105 YRN---------MILELNASDDRGIGVVR----EQIQNFASTQSLSFGVKTSVKLVLLDE 151
R + + D + + +R ++ ++ + + K+ ++DE
Sbjct: 343 ERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNACTTAPFSSRYKVFIIDE 402
Query: 152 ADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHVSERL 211
+ K+ L + +++ F +I + K+ + SR R+ F + A ++ RL
Sbjct: 403 CQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDADIASRL 462
Query: 212 KHVIKAEGLDVQDSGLEALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTG 265
K + EGL+ + L+ + S G +R A +L + ++IT VY TG
Sbjct: 463 KRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTG 516
>Medtr4g104350.2 | DNA polymerase III subunit gamma/tau | HC |
chr4:43113918-43109005 | 20130731
Length = 936
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 101/234 (43%), Gaps = 16/234 (6%)
Query: 48 KYRPQSLDDVAAHRDIVDTIDRLTTENRLPHL-LLYGPPGTGKTST--ILAVARKLYGAQ 104
K+RP+S +D+ + ++ + R+ L +GP GTGKTS I A A +
Sbjct: 283 KFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCISLE 342
Query: 105 YRN---------MILELNASDDRGIGVVR----EQIQNFASTQSLSFGVKTSVKLVLLDE 151
R + + D + + +R ++ ++ + + K+ ++DE
Sbjct: 343 ERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNACTTAPFSSRYKVFIIDE 402
Query: 152 ADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHVSERL 211
+ K+ L + +++ F +I + K+ + SR R+ F + A ++ RL
Sbjct: 403 CQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDADIASRL 462
Query: 212 KHVIKAEGLDVQDSGLEALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTG 265
K + EGL+ + L+ + S G +R A +L + ++IT VY TG
Sbjct: 463 KRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTG 516
>Medtr5g098850.1 | AAA family ATPase | HC | chr5:43286117-43283972 |
20130731
Length = 551
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 31/226 (13%)
Query: 44 PWVEKYRPQSLDDVAAHRDIVDTIDRLTTE---NRLPHLLLYGPPGTGKTSTILAVARKL 100
P E+ RP++LD+V ++ T L + RLP +LL+GPPGTGKT+ A+
Sbjct: 115 PLYERLRPRTLDEVVGQDHLLSTNSILRSSIQRKRLPSILLWGPPGTGKTTIAKAIVNSS 174
Query: 101 YGAQ----YRNMILELNASDDRGIGVVREQIQNFASTQSLSFGVKTSVKLVL-LDEADAM 155
+ YR + L S G+ VRE + ++ VKT+ VL +DE
Sbjct: 175 STTKDSPLYRFVSLSAVTS---GVKDVREAVD-----EARKVRVKTNQTTVLFVDEVHRF 226
Query: 156 TKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAH--------V 207
K Q + VIE + A N +I L SRC PL H V
Sbjct: 227 NKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLILLLKRAV 286
Query: 208 SERLKHVIKAEG-------LDVQDSGLEALVRLSNGDMRKALNILQ 246
++ K ++K+ G + V + ++ + +GD R ALN+L+
Sbjct: 287 NDTEKGLVKSLGFGSCKVDVSVGEDVVDFVANNCDGDARVALNVLE 332
>Medtr4g050180.1 | replication factor C1 | HC |
chr4:17764475-17754850 | 20130731
Length = 988
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 40/242 (16%)
Query: 40 QKAIPWVEKYRPQSLDDVAAHRDIVDTI----------------DRLTTENRLPH----L 79
Q + W EK+RP++ D+ ++ +V + ++ + P +
Sbjct: 370 QSNLMWTEKHRPKNPKDIIGNQSLVAQLRTWLKGWHEQFSNTGGNKKGKKQNDPASKKAV 429
Query: 80 LLYGPPGTGKTSTILAVARKLYGAQYRNMILELNASDDRG----------IGVVREQIQN 129
LL G PG GKT++ V ++L G Q +E+NASD RG G I+
Sbjct: 430 LLSGTPGIGKTTSAKLVCQEL-GFQ----AIEVNASDSRGKADSKIEKGISGSNANSIKE 484
Query: 130 FASTQSLSFGV---KTSVKLVLLDEADAMTKDAQFALRRVI--EKYTKSTRFALICNHVN 184
+ ++L + K S ++++DE D M+ + + +I K +K + + +
Sbjct: 485 LVTNEALGRNMDRSKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYS 544
Query: 185 KIIPALQSRCTRFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALNI 244
+ + +L + C + ++++ V KAEGL V + LE L NGDMR ALN
Sbjct: 545 QKLKSLMNYCLLLSYRKPTKQQMAKKFMEVAKAEGLQVNEIALEELAERVNGDMRMALNQ 604
Query: 245 LQ 246
LQ
Sbjct: 605 LQ 606
>Medtr4g050180.2 | replication factor C1 | HC |
chr4:17764874-17754850 | 20130731
Length = 1016
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 108/242 (44%), Gaps = 40/242 (16%)
Query: 40 QKAIPWVEKYRPQSLDDVAAHRDIVDTI----------------DRLTTENRLPH----L 79
Q + W EK+RP++ D+ ++ +V + ++ + P +
Sbjct: 399 QSNLMWTEKHRPKNPKDIIGNQSLVAQLRTWLKGWHEQFSNTGGNKKGKKQNDPASKKAV 458
Query: 80 LLYGPPGTGKTSTILAVARKLYGAQYRNMILELNASDDRG----------IGVVREQIQN 129
LL G PG GKT++ V ++L G Q +E+NASD RG G I+
Sbjct: 459 LLSGTPGIGKTTSAKLVCQEL-GFQ----AIEVNASDSRGKADSKIEKGISGSNANSIKE 513
Query: 130 FASTQSLSFGV---KTSVKLVLLDEADAMTKDAQFALRRVI--EKYTKSTRFALICNHVN 184
+ ++L + K S ++++DE D M+ + + +I K +K + + +
Sbjct: 514 LVTNEALGRNMDRSKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYS 573
Query: 185 KIIPALQSRCTRFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALNI 244
+ + +L + C + ++++ V KAEGL V + LE L NGDMR ALN
Sbjct: 574 QKLKSLMNYCLLLSYRKPTKQQMAKKFMEVAKAEGLQVNEIALEELAERVNGDMRMALNQ 633
Query: 245 LQ 246
LQ
Sbjct: 634 LQ 635
>Medtr2g017980.1 | DNA polymerase III subunit gamma/tau | HC |
chr2:5258656-5265014 | 20130731
Length = 1177
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 109/260 (41%), Gaps = 20/260 (7%)
Query: 13 DGDDDLTYSARPDKGKSVLVAGNPPGGQKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTT 72
D D DL AR + L + Q +KY P++ D+ + + +
Sbjct: 436 DIDSDLASEARSGSQHNKLRRNHHSRHQS---LTQKYIPRTFRDMVGQNLVAQALSNAVS 492
Query: 73 ENRLPHL-LLYGPPGTGKTSTILAVARKLYGAQ--------YRNMILELNASDDRGIGVV 123
++ L + YGP GTGKTS AR L + + N + + R I V
Sbjct: 493 RRKVGLLYVFYGPHGTGKTSCARIFARALNCSSSEHPKPCGFCNYCIAHDMGKSRNIREV 552
Query: 124 R-------EQIQNFASTQSLSFGVKTSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRF 176
E I + +S + + ++ + D+ D+++ D A+ +VI++ + F
Sbjct: 553 GPVSNFDFENIMDLLDNMIVS-QLPSQYRVFIFDDCDSLSADCWNAISKVIDRAPRRVVF 611
Query: 177 ALICNHVNKIIPALQSRCTRFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNG 236
L+ ++ + + SRC +F F L + + L + EGLD+ L+ + S+G
Sbjct: 612 ILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYTLHGIATKEGLDIDKDALKLIASRSDG 671
Query: 237 DMRKALNILQSTHMASQQIT 256
+R A L+ + Q+I+
Sbjct: 672 SLRDAEMTLEQLSLLGQRIS 691
>Medtr2g017980.2 | DNA polymerase III subunit gamma/tau | HC |
chr2:5258652-5265014 | 20130731
Length = 1177
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 109/260 (41%), Gaps = 20/260 (7%)
Query: 13 DGDDDLTYSARPDKGKSVLVAGNPPGGQKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTT 72
D D DL AR + L + Q +KY P++ D+ + + +
Sbjct: 436 DIDSDLASEARSGSQHNKLRRNHHSRHQS---LTQKYIPRTFRDMVGQNLVAQALSNAVS 492
Query: 73 ENRLPHL-LLYGPPGTGKTSTILAVARKLYGAQ--------YRNMILELNASDDRGIGVV 123
++ L + YGP GTGKTS AR L + + N + + R I V
Sbjct: 493 RRKVGLLYVFYGPHGTGKTSCARIFARALNCSSSEHPKPCGFCNYCIAHDMGKSRNIREV 552
Query: 124 R-------EQIQNFASTQSLSFGVKTSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRF 176
E I + +S + + ++ + D+ D+++ D A+ +VI++ + F
Sbjct: 553 GPVSNFDFENIMDLLDNMIVS-QLPSQYRVFIFDDCDSLSADCWNAISKVIDRAPRRVVF 611
Query: 177 ALICNHVNKIIPALQSRCTRFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNG 236
L+ ++ + + SRC +F F L + + L + EGLD+ L+ + S+G
Sbjct: 612 ILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYTLHGIATKEGLDIDKDALKLIASRSDG 671
Query: 237 DMRKALNILQSTHMASQQIT 256
+R A L+ + Q+I+
Sbjct: 672 SLRDAEMTLEQLSLLGQRIS 691
>Medtr4g134530.1 | DNA polymerase III subunit gamma/tau | HC |
chr4:56342192-56348822 | 20130731
Length = 1203
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 102/233 (43%), Gaps = 22/233 (9%)
Query: 48 KYRPQSLDDVAAHRDIVDTIDRLTTENRL-PHLLLYGPPGTGKTSTILAVARKL------ 100
KY+P ++ +V ++ + R+ P L GP GTGKTST A L
Sbjct: 430 KYKPLFFGELIGQTIVVHSLVNAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASD 489
Query: 101 ------YGAQYRNMI-------LELNASDDRGIGVVREQIQNFASTQSLSFGVKTSVKLV 147
Y + + + +E++ ++ +GI R ++ A+ S + + +V
Sbjct: 490 EGKPCGYCGECADFVSGKSCDLVEVDGTNKKGIDKARYLLKRLAAGSSSAASSRYTV--F 547
Query: 148 LLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHV 207
++DE +T + +E + F I + ++ + +QSRC ++ F + +
Sbjct: 548 VIDECHLLTSKTWLGFLKFLEAPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDI 607
Query: 208 SERLKHVIKAEGLDVQDSGLEALVRLSNGDMRKALNILQSTHMASQQITEEAV 260
RL+ + E LDV+ L+ + ++G +R A +L+ + ++IT V
Sbjct: 608 VTRLRKISTQENLDVETDALDLIALNADGSLRDAETMLEQLSLLGKRITTSLV 660
>Medtr4g102700.1 | replication factor C subunit | HC |
chr4:42565152-42566589 | 20130731
Length = 150
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%)
Query: 155 MTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHVSERLKHV 214
MT AQ ALRR +E Y+ ST FAL N +KII +QSRC RF+ L + RL V
Sbjct: 1 MTSGAQQALRRTMEIYSNSTHFALASNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVV 60
Query: 215 IKAE 218
++AE
Sbjct: 61 VQAE 64