Miyakogusa Predicted Gene

Lj1g3v0816040.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0816040.1 Non Characterized Hit- tr|H3DKS9|H3DKS9_TETNG
Uncharacterized protein (Fragment) OS=Tetraodon
nigrov,29.58,0.000000000007,TRAM_LAG1_CLN8,TRAM/LAG1/CLN8 homology
domain; TRAM, LAG1 and CLN8 homology domains.,TRAM/LAG1/CLN8
,CUFF.26375.1
         (276 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088060.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain...   425   e-119

>Medtr3g088060.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain
           protein | HC | chr3:39922169-39919131 | 20130731
          Length = 287

 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/275 (78%), Positives = 237/275 (86%), Gaps = 2/275 (0%)

Query: 4   NKVEAFFSTTLILWLCSLSFHILFNHRTHLLYVLAGSFFYQTANSLIRFFFSKPT--DPL 61
           N +E FF TTLILWL S+SF I+  H+T LLY++AGSFFYQT+NSLIR+F  K +  DPL
Sbjct: 13  NAIELFFLTTLILWLASVSFQIILTHQTRLLYIIAGSFFYQTSNSLIRYFSPKSSLSDPL 72

Query: 62  FVNTAVSLLHSAVTSTSVIFILSKQWLSNGSSGMFDHSQLVEGTWPWAFEALSFSCGYFA 121
           FVNTAVSL+HS VTS+SVIFILSKQWL+NG SGMFDHSQLVEGTW WAFEAL FSCGYFA
Sbjct: 73  FVNTAVSLIHSLVTSSSVIFILSKQWLNNGLSGMFDHSQLVEGTWSWAFEALCFSCGYFA 132

Query: 122 YDQWDMLRFRLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRK 181
           YDQWDML +RLY+GWIPSIL+HHLVLLICFTLALYRN+TINYLILTLICELHSIFLHVRK
Sbjct: 133 YDQWDMLHYRLYSGWIPSILLHHLVLLICFTLALYRNITINYLILTLICELHSIFLHVRK 192

Query: 182 VRRMAGVRDAKSSIVKLEWFLNWVTFLVARFASHILITVKLIRDAHKFEKGVELPMALFG 241
           VRRMAG+RDA+S IVKLEWFLNW TF VAR  SH+LIT KLI+DAHKF KGVELP+ALFG
Sbjct: 193 VRRMAGIRDARSVIVKLEWFLNWTTFFVARCVSHVLITAKLIKDAHKFGKGVELPLALFG 252

Query: 242 MAGMXXXXXXXXXXXXKAFKREKKSQQANHRQHHE 276
           MAGM            KAFKRE+KSQ ANHRQHHE
Sbjct: 253 MAGMNILNIGLGMDLLKAFKRERKSQHANHRQHHE 287