Miyakogusa Predicted Gene

Lj1g3v0807620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0807620.1 Non Characterized Hit- tr|I1KA90|I1KA90_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.23237 PE,89.83,0,GENERAL
TRANSCRIPTION FACTOR IIH SUBUNIT 3,NULL; TRANSCRIPTION INITIATION
FACTOR IIH (TFIIH), POLYPE,CUFF.26357.1
         (294 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g072430.1 | general transcription factor IIH subunit, puta...   482   e-136
Medtr3g072430.2 | general transcription factor IIH subunit, puta...   467   e-132
Medtr3g072430.3 | general transcription factor IIH subunit, puta...   467   e-132
Medtr3g072430.4 | general transcription factor IIH subunit, puta...   348   4e-96
Medtr3g072430.5 | general transcription factor IIH subunit, puta...   348   4e-96

>Medtr3g072430.1 | general transcription factor IIH subunit,
           putative | HC | chr3:32560390-32566153 | 20130731
          Length = 296

 Score =  482 bits (1241), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/281 (82%), Positives = 244/281 (86%)

Query: 3   SAPSKLYADDVSLLVVTLDTNPXXXXXXXXXXXXXLSQVLAFLNSILLLGQLNQVVVIAT 62
           SAPSK YADDVSLLVVTLDTNP             LSQVLAFLNSILLLGQLNQVVVIAT
Sbjct: 4   SAPSKNYADDVSLLVVTLDTNPFFWSSFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIAT 63

Query: 63  GCNSCGYVYDSASDKNHASTTGTMPALYSNLLRNLEQFVARDQQLAAANHAPGTVPXXXX 122
           GCNSC YVYDSASDKNHAST GTMPA+YSNLL NL++FVA+DQQL   +H PGT+P    
Sbjct: 64  GCNSCSYVYDSASDKNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLL 123

Query: 123 XXXXXMALCYIQRAFRSGPMHPQPRILCLHGSADGPEQYVAIMNAIFSAQHSTVPIDSCY 182
                MALCYIQRAFRSGPMHPQPRILCL GS DGPEQYVAIMNAIFSAQ S VP+DSC+
Sbjct: 124 SGALSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCF 183

Query: 183 IGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDFRAS 242
           IGSNNSAFLQQASYITGGIYYRPPQ++GLFQYLSTVFATDLHSR FLRLPKS+GVDFRAS
Sbjct: 184 IGSNNSAFLQQASYITGGIYYRPPQMEGLFQYLSTVFATDLHSREFLRLPKSLGVDFRAS 243

Query: 243 CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQSD 283
           CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTC SVFGQ QS+
Sbjct: 244 CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCSSVFGQTQSE 284


>Medtr3g072430.2 | general transcription factor IIH subunit,
           putative | HC | chr3:32560390-32566125 | 20130731
          Length = 276

 Score =  467 bits (1201), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/271 (83%), Positives = 236/271 (87%)

Query: 3   SAPSKLYADDVSLLVVTLDTNPXXXXXXXXXXXXXLSQVLAFLNSILLLGQLNQVVVIAT 62
           SAPSK YADDVSLLVVTLDTNP             LSQVLAFLNSILLLGQLNQVVVIAT
Sbjct: 4   SAPSKNYADDVSLLVVTLDTNPFFWSSFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIAT 63

Query: 63  GCNSCGYVYDSASDKNHASTTGTMPALYSNLLRNLEQFVARDQQLAAANHAPGTVPXXXX 122
           GCNSC YVYDSASDKNHAST GTMPA+YSNLL NL++FVA+DQQL   +H PGT+P    
Sbjct: 64  GCNSCSYVYDSASDKNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLL 123

Query: 123 XXXXXMALCYIQRAFRSGPMHPQPRILCLHGSADGPEQYVAIMNAIFSAQHSTVPIDSCY 182
                MALCYIQRAFRSGPMHPQPRILCL GS DGPEQYVAIMNAIFSAQ S VP+DSC+
Sbjct: 124 SGALSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCF 183

Query: 183 IGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDFRAS 242
           IGSNNSAFLQQASYITGGIYYRPPQ++GLFQYLSTVFATDLHSR FLRLPKS+GVDFRAS
Sbjct: 184 IGSNNSAFLQQASYITGGIYYRPPQMEGLFQYLSTVFATDLHSREFLRLPKSLGVDFRAS 243

Query: 243 CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTC 273
           CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTC
Sbjct: 244 CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTC 274


>Medtr3g072430.3 | general transcription factor IIH subunit,
           putative | HC | chr3:32560390-32566125 | 20130731
          Length = 275

 Score =  467 bits (1201), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/271 (83%), Positives = 236/271 (87%)

Query: 3   SAPSKLYADDVSLLVVTLDTNPXXXXXXXXXXXXXLSQVLAFLNSILLLGQLNQVVVIAT 62
           SAPSK YADDVSLLVVTLDTNP             LSQVLAFLNSILLLGQLNQVVVIAT
Sbjct: 4   SAPSKNYADDVSLLVVTLDTNPFFWSSFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIAT 63

Query: 63  GCNSCGYVYDSASDKNHASTTGTMPALYSNLLRNLEQFVARDQQLAAANHAPGTVPXXXX 122
           GCNSC YVYDSASDKNHAST GTMPA+YSNLL NL++FVA+DQQL   +H PGT+P    
Sbjct: 64  GCNSCSYVYDSASDKNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLL 123

Query: 123 XXXXXMALCYIQRAFRSGPMHPQPRILCLHGSADGPEQYVAIMNAIFSAQHSTVPIDSCY 182
                MALCYIQRAFRSGPMHPQPRILCL GS DGPEQYVAIMNAIFSAQ S VP+DSC+
Sbjct: 124 SGALSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCF 183

Query: 183 IGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDFRAS 242
           IGSNNSAFLQQASYITGGIYYRPPQ++GLFQYLSTVFATDLHSR FLRLPKS+GVDFRAS
Sbjct: 184 IGSNNSAFLQQASYITGGIYYRPPQMEGLFQYLSTVFATDLHSREFLRLPKSLGVDFRAS 243

Query: 243 CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTC 273
           CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTC
Sbjct: 244 CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTC 274


>Medtr3g072430.4 | general transcription factor IIH subunit,
           putative | HC | chr3:32560392-32566153 | 20130731
          Length = 226

 Score =  348 bits (892), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 170/214 (79%), Positives = 180/214 (84%)

Query: 3   SAPSKLYADDVSLLVVTLDTNPXXXXXXXXXXXXXLSQVLAFLNSILLLGQLNQVVVIAT 62
           SAPSK YADDVSLLVVTLDTNP             LSQVLAFLNSILLLGQLNQVVVIAT
Sbjct: 4   SAPSKNYADDVSLLVVTLDTNPFFWSSFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIAT 63

Query: 63  GCNSCGYVYDSASDKNHASTTGTMPALYSNLLRNLEQFVARDQQLAAANHAPGTVPXXXX 122
           GCNSC YVYDSASDKNHAST GTMPA+YSNLL NL++FVA+DQQL   +H PGT+P    
Sbjct: 64  GCNSCSYVYDSASDKNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLL 123

Query: 123 XXXXXMALCYIQRAFRSGPMHPQPRILCLHGSADGPEQYVAIMNAIFSAQHSTVPIDSCY 182
                MALCYIQRAFRSGPMHPQPRILCL GS DGPEQYVAIMNAIFSAQ S VP+DSC+
Sbjct: 124 SGALSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCF 183

Query: 183 IGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLS 216
           IGSNNSAFLQQASYITGGIYYRPPQ++GLFQYLS
Sbjct: 184 IGSNNSAFLQQASYITGGIYYRPPQMEGLFQYLS 217


>Medtr3g072430.5 | general transcription factor IIH subunit,
           putative | HC | chr3:32560392-32564203 | 20130731
          Length = 226

 Score =  348 bits (892), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 170/214 (79%), Positives = 180/214 (84%)

Query: 3   SAPSKLYADDVSLLVVTLDTNPXXXXXXXXXXXXXLSQVLAFLNSILLLGQLNQVVVIAT 62
           SAPSK YADDVSLLVVTLDTNP             LSQVLAFLNSILLLGQLNQVVVIAT
Sbjct: 4   SAPSKNYADDVSLLVVTLDTNPFFWSSFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIAT 63

Query: 63  GCNSCGYVYDSASDKNHASTTGTMPALYSNLLRNLEQFVARDQQLAAANHAPGTVPXXXX 122
           GCNSC YVYDSASDKNHAST GTMPA+YSNLL NL++FVA+DQQL   +H PGT+P    
Sbjct: 64  GCNSCSYVYDSASDKNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLL 123

Query: 123 XXXXXMALCYIQRAFRSGPMHPQPRILCLHGSADGPEQYVAIMNAIFSAQHSTVPIDSCY 182
                MALCYIQRAFRSGPMHPQPRILCL GS DGPEQYVAIMNAIFSAQ S VP+DSC+
Sbjct: 124 SGALSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCF 183

Query: 183 IGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLS 216
           IGSNNSAFLQQASYITGGIYYRPPQ++GLFQYLS
Sbjct: 184 IGSNNSAFLQQASYITGGIYYRPPQMEGLFQYLS 217