Miyakogusa Predicted Gene
- Lj1g3v0765570.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0765570.1 tr|A9P9Z6|A9P9Z6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1092563 PE=2
SV=1,69.12,2e-19,P-loop containing nucleoside triphosphate
hydrolases,NULL; Ras,Small GTPase superfamily; no
descript,gene.g30237.t1.1
(66 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g090717.1 | RAB GTPase-like protein A5B | HC | chr1:407164... 124 3e-29
Medtr1g062760.1 | RAB GTPase-like protein A5B | HC | chr1:274958... 86 7e-18
Medtr7g103070.2 | RAB GTPase-like protein C2B | HC | chr7:414402... 82 9e-17
Medtr7g103070.1 | RAB GTPase-like protein C2B | HC | chr7:414408... 82 1e-16
Medtr8g093740.1 | RAB GTPase-like protein A5B | HC | chr8:392232... 69 1e-12
Medtr8g093740.2 | RAB GTPase-like protein A5B | HC | chr8:392232... 69 1e-12
Medtr8g093740.5 | RAB GTPase-like protein A5B | HC | chr8:392232... 68 2e-12
Medtr8g093740.4 | RAB GTPase-like protein A5B | HC | chr8:392234... 68 2e-12
Medtr8g093740.3 | RAB GTPase-like protein A5B | HC | chr8:392232... 68 2e-12
Medtr3g096350.1 | small GTPase family RAB protein | HC | chr3:44... 67 4e-12
Medtr1g029450.1 | small GTPase family RAB protein | HC | chr1:10... 65 2e-11
>Medtr1g090717.1 | RAB GTPase-like protein A5B | HC |
chr1:40716435-40711176 | 20130731
Length = 212
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/66 (89%), Positives = 60/66 (90%)
Query: 1 MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQ 60
MALAKEHRCLFLECSAKT+ENVQQCF DLTLKILEVPSLREKGSV VKRQKQK YET Q
Sbjct: 147 MALAKEHRCLFLECSAKTKENVQQCFKDLTLKILEVPSLREKGSVEVKRQKQKRFYETSQ 206
Query: 61 SGGCCS 66
GGCCS
Sbjct: 207 RGGCCS 212
>Medtr1g062760.1 | RAB GTPase-like protein A5B | HC |
chr1:27495849-27498608 | 20130731
Length = 211
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 1 MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQ--KQKHLYET 58
+ALAKE C F ECSAKTRENV +CF +L LKI+EVPSL E+GS VKR KQKH +
Sbjct: 144 LALAKEFGCSFFECSAKTRENVDKCFEELALKIMEVPSLLEEGSTSVKRNILKQKHEPQA 203
Query: 59 PQSGGCC 65
Q GGCC
Sbjct: 204 SQDGGCC 210
>Medtr7g103070.2 | RAB GTPase-like protein C2B | HC |
chr7:41440287-41436532 | 20130731
Length = 158
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 1 MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQ--KQKHLYET 58
++LAKE CL LECSAKTRENV++CF +L LKI+E PSL E+GS KR KQK ++
Sbjct: 91 LSLAKELGCLLLECSAKTRENVEKCFEELALKIMEAPSLLEEGSAATKRNVLKQKQEPQS 150
Query: 59 PQSGGCCS 66
Q+GGCCS
Sbjct: 151 SQNGGCCS 158
>Medtr7g103070.1 | RAB GTPase-like protein C2B | HC |
chr7:41440857-41436532 | 20130731
Length = 214
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 1 MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQ--KQKHLYET 58
++LAKE CL LECSAKTRENV++CF +L LKI+E PSL E+GS KR KQK ++
Sbjct: 147 LSLAKELGCLLLECSAKTRENVEKCFEELALKIMEAPSLLEEGSAATKRNVLKQKQEPQS 206
Query: 59 PQSGGCCS 66
Q+GGCCS
Sbjct: 207 SQNGGCCS 214
>Medtr8g093740.1 | RAB GTPase-like protein A5B | HC |
chr8:39223227-39227011 | 20130731
Length = 208
Score = 68.9 bits (167), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 7/67 (10%)
Query: 3 LAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQS- 61
A+E+ CLF+ECSAKTR NVQQCF +L LK+L+ PSL +GS VK+ K + PQS
Sbjct: 145 FAREYGCLFIECSAKTRVNVQQCFEELVLKVLDTPSLLAEGSKGVKKNIFK---DKPQSD 201
Query: 62 ---GGCC 65
GCC
Sbjct: 202 ASASGCC 208
>Medtr8g093740.2 | RAB GTPase-like protein A5B | HC |
chr8:39223240-39227053 | 20130731
Length = 208
Score = 68.9 bits (167), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 7/67 (10%)
Query: 3 LAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQS- 61
A+E+ CLF+ECSAKTR NVQQCF +L LK+L+ PSL +GS VK+ K + PQS
Sbjct: 145 FAREYGCLFIECSAKTRVNVQQCFEELVLKVLDTPSLLAEGSKGVKKNIFK---DKPQSD 201
Query: 62 ---GGCC 65
GCC
Sbjct: 202 ASASGCC 208
>Medtr8g093740.5 | RAB GTPase-like protein A5B | HC |
chr8:39223227-39227011 | 20130731
Length = 175
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 7/69 (10%)
Query: 1 MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQ 60
+ A+E+ CLF+ECSAKTR NVQQCF +L LK+L+ PSL +GS VK+ K + PQ
Sbjct: 110 IDFAREYGCLFIECSAKTRVNVQQCFEELVLKVLDTPSLLAEGSKGVKKNIFK---DKPQ 166
Query: 61 S----GGCC 65
S GCC
Sbjct: 167 SDASASGCC 175
>Medtr8g093740.4 | RAB GTPase-like protein A5B | HC |
chr8:39223431-39227053 | 20130731
Length = 175
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 7/69 (10%)
Query: 1 MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQ 60
+ A+E+ CLF+ECSAKTR NVQQCF +L LK+L+ PSL +GS VK+ K + PQ
Sbjct: 110 IDFAREYGCLFIECSAKTRVNVQQCFEELVLKVLDTPSLLAEGSKGVKKNIFK---DKPQ 166
Query: 61 S----GGCC 65
S GCC
Sbjct: 167 SDASASGCC 175
>Medtr8g093740.3 | RAB GTPase-like protein A5B | HC |
chr8:39223227-39227053 | 20130731
Length = 175
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 7/69 (10%)
Query: 1 MALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQ 60
+ A+E+ CLF+ECSAKTR NVQQCF +L LK+L+ PSL +GS VK+ K + PQ
Sbjct: 110 IDFAREYGCLFIECSAKTRVNVQQCFEELVLKVLDTPSLLAEGSKGVKKNIFK---DKPQ 166
Query: 61 S----GGCC 65
S GCC
Sbjct: 167 SDASASGCC 175
>Medtr3g096350.1 | small GTPase family RAB protein | HC |
chr3:44038043-44043862 | 20130731
Length = 207
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 3 LAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQS- 61
A+E+ CLF+ECSAKTR NVQ CF +L LKIL+ PSL +GS K K+ + PQS
Sbjct: 144 FAREYGCLFIECSAKTRVNVQHCFEELVLKILDTPSLLAEGS---KGNKKNIFKDKPQSD 200
Query: 62 ---GGCC 65
GCC
Sbjct: 201 ASTSGCC 207
>Medtr1g029450.1 | small GTPase family RAB protein | HC |
chr1:10110413-10114701 | 20130731
Length = 215
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 3 LAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQ--KQKHLYETPQ 60
A+++ CL+ ECSAKTR NV+QCF +L +KIL+ PSL +GS VK+ KQK
Sbjct: 149 FARQYGCLYTECSAKTRVNVEQCFEELVMKILDTPSLLAEGSSGVKKNIFKQKPQESDAS 208
Query: 61 SGGCCS 66
CCS
Sbjct: 209 PSSCCS 214