Miyakogusa Predicted Gene

Lj1g3v0762230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0762230.1 Non Characterized Hit- tr|I3SY75|I3SY75_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.39,0,Ribosomal_S13,Ribosomal protein S13; bact_S13: 30S
ribosomal protein S13,Ribosomal protein S13, bact,CUFF.26266.1
         (164 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g073140.1 | 30S ribosomal protein S13 | HC | chr3:32955385...   261   1e-70
Medtr4g081120.1 | ribosomal protein S13P/S18e | HC | chr4:314032...   124   6e-29
Medtr4g081120.2 | ribosomal protein S13P/S18e | HC | chr4:314040...   123   8e-29

>Medtr3g073140.1 | 30S ribosomal protein S13 | HC |
           chr3:32955385-32954404 | 20130731
          Length = 166

 Score =  261 bits (668), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/153 (83%), Positives = 139/153 (90%), Gaps = 2/153 (1%)

Query: 1   MAQTLAMPVAPSLAAISNGHHHFSSRVSLPVANTPK--VQGLSIKSVRVGGVEIPNNKRI 58
           M QTL+MPVAPSL+ IS GH HFS+RVS PV NTPK  VQ L+I  VRVGGVEIPNNKRI
Sbjct: 1   MVQTLSMPVAPSLSIISKGHAHFSNRVSFPVLNTPKSKVQRLNIVCVRVGGVEIPNNKRI 60

Query: 59  EFSLQYIHGVGRVRARKILCDLNMDNKITKELSEEELITLRDEVSKYMIEGDLRRFNATN 118
           EFSLQYIHGVGR RAR+IL D++M+NK+TKELSEEELI+LRDEV+KYMIEGDLRRFNA N
Sbjct: 61  EFSLQYIHGVGRNRARQILTDISMENKVTKELSEEELISLRDEVNKYMIEGDLRRFNALN 120

Query: 119 IKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTL 151
           IKRLK+IQCYRGIRHIQGLPCRGQRTKNNCRTL
Sbjct: 121 IKRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTL 153


>Medtr4g081120.1 | ribosomal protein S13P/S18e | HC |
           chr4:31403275-31402154 | 20130731
          Length = 176

 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 8/121 (6%)

Query: 38  QGLSIKSVRVGGV--------EIPNNKRIEFSLQYIHGVGRVRARKILCDLNMDNKITKE 89
           Q LS + V+V  +        EIP+NKR+E++LQ+IHG+GR +A  I+C+L ++NK  K+
Sbjct: 45  QNLSFRGVQVRNINIGGGLGGEIPDNKRLEYALQHIHGIGRGKAHHIVCELGVENKYVKD 104

Query: 90  LSEEELITLRDEVSKYMIEGDLRRFNATNIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCR 149
           LS+ EL +LR+ +SKY+I  DL++    ++ RL  IQCYRGIRH   LPCRGQRT  N R
Sbjct: 105 LSKRELYSLRELLSKYLIGNDLKKLVQRDVGRLVGIQCYRGIRHADSLPCRGQRTHTNAR 164

Query: 150 T 150
           T
Sbjct: 165 T 165


>Medtr4g081120.2 | ribosomal protein S13P/S18e | HC |
           chr4:31404030-31401838 | 20130731
          Length = 156

 Score =  123 bits (308), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 90/127 (70%), Gaps = 3/127 (2%)

Query: 27  VSLPVANTPKVQGLSIKSVRVGGV---EIPNNKRIEFSLQYIHGVGRVRARKILCDLNMD 83
           +SL      + +G+ ++++ +GG    EIP+NKR+E++LQ+IHG+GR +A  I+C+L ++
Sbjct: 19  LSLHCFGFVQFRGVQVRNINIGGGLGGEIPDNKRLEYALQHIHGIGRGKAHHIVCELGVE 78

Query: 84  NKITKELSEEELITLRDEVSKYMIEGDLRRFNATNIKRLKDIQCYRGIRHIQGLPCRGQR 143
           NK  K+LS+ EL +LR+ +SKY+I  DL++    ++ RL  IQCYRGIRH   LPCRGQR
Sbjct: 79  NKYVKDLSKRELYSLRELLSKYLIGNDLKKLVQRDVGRLVGIQCYRGIRHADSLPCRGQR 138

Query: 144 TKNNCRT 150
           T  N RT
Sbjct: 139 THTNART 145