Miyakogusa Predicted Gene

Lj1g3v0725880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0725880.1 tr|B9IDQ6|B9IDQ6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_775696 PE=4
SV=1,28.85,0.000001,seg,NULL; WRC,WRC; DNA binding domain with
preference for A/T r,AT hook, DNA-binding motif,CUFF.26234.1
         (787 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g008060.2 | transcription factor jumonji (JmjC) domain pro...   274   2e-73
Medtr1g008060.1 | transcription factor jumonji (JmjC) domain pro...   271   1e-72
Medtr1g008060.3 | transcription factor jumonji (JmjC) domain pro...   271   1e-72

>Medtr1g008060.2 | transcription factor jumonji (JmjC) domain
           protein, putative | HC | chr1:708137-717059 | 20130731
          Length = 1692

 Score =  274 bits (701), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 322/920 (35%), Positives = 428/920 (46%), Gaps = 207/920 (22%)

Query: 1   MDETGE-ECRRCGRKAPPGWRCTERALSGKSVCERHF-LYNQKKTERWKEGASGITPKRR 58
           MDETG+ E RRC R    GWRC E+AL GK+ CERH   Y  + +  + E   GI     
Sbjct: 1   MDETGDDESRRCSRNGSGGWRCKEQALPGKTHCERHHEYYKSRNSSSFVEKNGGI----- 55

Query: 59  SGRRKPVDNSENGVV----DDGCKELFG-DPNGTPTVVDEFTGLCGVSEGDAGVNLNLGC 113
                      NGVV    D+G K LFG D +G   VV+ F G+ G  E + GVN  +G 
Sbjct: 56  ----------RNGVVVDDHDNGGKGLFGGDDHG---VVEGFGGVFGDVEVNGGVNAGIGR 102

Query: 114 ESLNLQDKGEEGQQVHSGGFGEGCGRMGQVLGDYGVEYA----EDRNAVAGLG------- 162
           E  NL  +G+  Q      F +  G +GQ LGD GVE+     EDRN   GLG       
Sbjct: 103 ERFNLWQQGDGQQGGR---FEQASGNLGQFLGD-GVEFVGGFVEDRNRAVGLGQQWGGVG 158

Query: 163 ------AFRNVGNEDHGC-VAGRNVCVNDRLGLPSEGIESLIGEEPGFG-----SFQALL 210
                     VG +DHG  V G  VC ND  G  S+GI  LIGE   FG     SFQALL
Sbjct: 159 VFGNGGGVSGVGKDDHGNGVDG--VCGNDSPGFGSDGINGLIGEGGCFGNLYDRSFQALL 216

Query: 211 CKDRGCAEDVIFIGDVTGFEGLSGENTHGFRDEVGGFVENPCFEGEND--SNKEGPGSNY 268
            + R C EDV   G  T F+GL GE+ + FR  VG   +   FEGE +  S    P S+ 
Sbjct: 217 SQGRVCDEDVNLTGGGTSFQGLGGESAYDFRG-VGNLSQCGKFEGEKNVGSILTVPESSN 275

Query: 269 KMSALGFEEEIGLLLSRGGTTNEEARCEALRPLSKRGRPKGSKNENDNKQLSTALDGQSV 328
           KM A G EE + +LLS G + NEEAR EAL+PL+KRGRPKGSKN+   K++    +G++V
Sbjct: 276 KMGAFGVEEGMEMLLSGGVSINEEARGEALKPLAKRGRPKGSKNKIKKKEVDLVTNGETV 335

Query: 329 GGDDNAGTIGMSSVTDLGIEIAVLSGEKDKSSDEVADLGETARAEKSGRP---------- 378
            G  N GT    +V  L  E +V SG+ D+   E  D+G+ AR +K G+P          
Sbjct: 336 CGSANVGT----TVEILETEKSVFSGKADQ---EGVDMGDIARTKKRGQPEDWKRGRHII 388

Query: 379 -----------------------KVSKNKIRRVEHVGNVV--AVKIVGPKKHGRPKSSKC 413
                                  K S N+ + VE V + V  A +I  PKK GR ++SKC
Sbjct: 389 LAVGYEIDGVGEITGPMERGRKSKGSVNEEKNVEEVSSEVAGAGEIARPKKLGRMEASKC 448

Query: 414 RKKNIMXXXXXXXXXXXXXKKLGRPKGSLNKLKNTVDCNNEGSGAGEIVXXXXXXXXXXS 473
            K+ ++             KK GRPKGS    +  ++   E +GAGEI           S
Sbjct: 449 GKEIVVEVSNDVGGEIVRRKKRGRPKGSKCGKEIVLEVIIEVAGAGEIARPKKLGRLEGS 508

Query: 474 KNKVNNIMEVSKKAASGGDCKIAGPKKCGRPKGSKNKQKNIVQVSQEVAGSADCEIAGPK 533
           K     ++EVS   A     +I  PKK GRPKGSK  ++ +V+V+ EVAG+   EIA  K
Sbjct: 509 KCGKEIVVEVSNDVAG----EIVRPKKRGRPKGSKCGKEIVVEVNHEVAGAG--EIARSK 562

Query: 534 KCGRPKGSMKKRKSLVCASILEGAGGITREGLENKML--SNLCQEHIEYTQPVVRGGRPK 591
           K GRPKG  K +K +V            ++ LE++ L    L Q+ ++  +P +  GRPK
Sbjct: 563 KRGRPKG-YKCQKEIVIKRGRPKGTKNKKKILEDQELHVQTLVQDEVQNVKPKL--GRPK 619

Query: 592 GSRNKKIKLAFQDMVDEVRFANKESDKATCAVGEEQKDHGSDIGKPIGLDNDKATLASDR 651
           GS+NKK  +A +D        NK        + +E+K  G     P G       +A+  
Sbjct: 620 GSKNKKKNIAGED-------GNK--------LHKEKKRRGW----PKGFCLKPKEIAARL 660

Query: 652 DQET------------PNQTLAQDEVQNDKSSVKPKRGRPKGSKNKMKSIANKARNKFGK 699
           D++             P +T  Q + + +      +RGRPKG+  K K I  +   K  +
Sbjct: 661 DEKIERRGRPKGSGMKPKETAVQLDAKIE------RRGRPKGAGKKPKEIVVRLDTKIER 714

Query: 700 VRNMRGRPKGSLRKKNETAYCLDSQNERNS---LDGRTSTEAAYRN-------------- 742
               RGRPKGS +K+ E A  L  Q E      +DG  ST   +++              
Sbjct: 715 ----RGRPKGSGKKQKEVASQLALQIESQKSTRVDGALSTIVPHKHIQEESISPLKDPVN 770

Query: 743 -----DV----------------------DLHRGHCSQEELLRMLSVEHKNIQGVGVEET 775
                D                       D+H+  CS  E LR L  +HKN Q V VEET
Sbjct: 771 KEEKSDFVLECSKDSGIEKITKGLMSKSGDVHK-RCS--ERLRTLLTDHKNSQDVEVEET 827

Query: 776 ---------IDYGLRSSGLM 786
                    ID+ L SS LM
Sbjct: 828 FCENEVEEAIDHELESSDLM 847


>Medtr1g008060.1 | transcription factor jumonji (JmjC) domain
           protein, putative | HC | chr1:708137-717726 | 20130731
          Length = 1701

 Score =  271 bits (694), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 296/819 (36%), Positives = 386/819 (47%), Gaps = 167/819 (20%)

Query: 1   MDETGE-ECRRCGRKAPPGWRCTERALSGKSVCERHF-LYNQKKTERWKEGASGITPKRR 58
           MDETG+ E RRC R    GWRC E+AL GK+ CERH   Y  + +  + E   GI     
Sbjct: 1   MDETGDDESRRCSRNGSGGWRCKEQALPGKTHCERHHEYYKSRNSSSFVEKNGGI----- 55

Query: 59  SGRRKPVDNSENGVV----DDGCKELFG-DPNGTPTVVDEFTGLCGVSEGDAGVNLNLGC 113
                      NGVV    D+G K LFG D +G   VV+ F G+ G  E + GVN  +G 
Sbjct: 56  ----------RNGVVVDDHDNGGKGLFGGDDHG---VVEGFGGVFGDVEVNGGVNAGIGR 102

Query: 114 ESLNLQDKGEEGQQVHSGGFGEGCGRMGQVLGDYGVEYA----EDRNAVAGLG------- 162
           E  NL  +G+  Q      F +  G +GQ LGD GVE+     EDRN   GLG       
Sbjct: 103 ERFNLWQQGDGQQGGR---FEQASGNLGQFLGD-GVEFVGGFVEDRNRAVGLGQQWGGVG 158

Query: 163 ------AFRNVGNEDHGC-VAGRNVCVNDRLGLPSEGIESLIGEEPGFG-----SFQALL 210
                     VG +DHG  V G  VC ND  G  S+GI  LIGE   FG     SFQALL
Sbjct: 159 VFGNGGGVSGVGKDDHGNGVDG--VCGNDSPGFGSDGINGLIGEGGCFGNLYDRSFQALL 216

Query: 211 CKDRGCAEDVIFIGDVTGFEGLSGENTHGFRDEVGGFVENPCFEGEND--SNKEGPGSNY 268
            + R C EDV   G  T F+GL GE+ + FR  VG   +   FEGE +  S    P S+ 
Sbjct: 217 SQGRVCDEDVNLTGGGTSFQGLGGESAYDFRG-VGNLSQCGKFEGEKNVGSILTVPESSN 275

Query: 269 KMSALGFEEEIGLLLSRGGTTNEEARCEALRPLSKRGRPKGSKNENDNKQLSTALDGQSV 328
           KM A G EE + +LLS G + NEEAR EAL+PL+KRGRPKGSKN+   K++    +G++V
Sbjct: 276 KMGAFGVEEGMEMLLSGGVSINEEARGEALKPLAKRGRPKGSKNKIKKKEVDLVTNGETV 335

Query: 329 GGDDNAGTIGMSSVTDLGIEIAVLSGEKDKSSDEVADLGETARAEKSGRP---------- 378
            G  N GT    +V  L  E +V SG+ D+   E  D+G+ AR +K G+P          
Sbjct: 336 CGSANVGT----TVEILETEKSVFSGKADQ---EGVDMGDIARTKKRGQPEDWKRGRHII 388

Query: 379 -----------------------KVSKNKIRRVEHVGNVV--AVKIVGPKKHGRPKSSKC 413
                                  K S N+ + VE V + V  A +I  PKK GR ++SKC
Sbjct: 389 LAVGYEIDGVGEITGPMERGRKSKGSVNEEKNVEEVSSEVAGAGEIARPKKLGRMEASKC 448

Query: 414 RKKNIMXXXXXXXXXXXXXKKLGRPKGSLNKLKNTVDCNNEGSGAGEIVXXXXXXXXXXS 473
            K+ ++             KK GRPKGS    +  ++ NNE  GA               
Sbjct: 449 GKEIVVEVSNDVGGEIVRRKKRGRPKGSKCGKEIVLEVNNEVVGA--------------- 493

Query: 474 KNKVNNIMEVSKKAASGGDCKIAGPKKCGRPKGSKNKQKNIVQVSQEVAGSADCEIAGPK 533
                   EV  + A  G+  IA PKK GR +GSK  ++ +V+VS +VAG    EI  PK
Sbjct: 494 --------EVIIEVAGAGE--IARPKKLGRLEGSKCGKEIVVEVSNDVAG----EIVRPK 539

Query: 534 KCGRPKGSMKKRKSLV-CASILEGAGGITREGLENKMLSNLCQEHIEYTQPVVRGGRPKG 592
           K GRPKGS   ++ +V     + GAG I R     +     CQ+ I     V++ GRPKG
Sbjct: 540 KRGRPKGSKCGKEIVVEVNHEVAGAGEIARSKKRGRPKGYKCQKEI-----VIKRGRPKG 594

Query: 593 SRNKKIKLAFQDMVDEVRFANKESDKATCAVGEEQKDHGSDIGKPIGLDNDKATLASDRD 652
           ++NKK  L  Q++                 V +E ++    +G+P G  N K  +A    
Sbjct: 595 TKNKKKILEDQEL------------HVQTLVQDEVQNVKPKLGRPKGSKNKKKNIAG--- 639

Query: 653 QETPNQTLAQDEVQNDKSSVKPKRGRPKGSKNKMKSIANKARNKFGKVRNMRGRPKGSLR 712
                      E  N     K +RG PKG   K K IA +   K  +    RGRPKGS  
Sbjct: 640 -----------EDGNKLHKEKKRRGWPKGFCLKPKEIAARLDEKIER----RGRPKGSGM 684

Query: 713 KKNETAYCLDSQNERNSLD---GRTSTEAAYRNDVDLHR 748
           K  ETA  LD++ ER       G+   E   R D  + R
Sbjct: 685 KPKETAVQLDAKIERRGRPKGAGKKPKEIVVRLDTKIER 723



 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 135/326 (41%), Gaps = 79/326 (24%)

Query: 303 KRGRPKGSKNENDNKQLSTALDGQSVGGDDNAGTIGMSSVTDLGIEIAVLSGEKDKSSDE 362
           KRGRPKGSK     K++   ++ + VG                  E+ +          E
Sbjct: 469 KRGRPKGSKC---GKEIVLEVNNEVVGA-----------------EVII----------E 498

Query: 363 VADLGETARAEKSGRPKVSKNKIRRVEHVGNVVAVKIVGPKKHGRPKSSKCRKKNIMXXX 422
           VA  GE AR +K GR + SK     V  V N VA +IV PKK GRPK SKC K+ ++   
Sbjct: 499 VAGAGEIARPKKLGRLEGSKCGKEIVVEVSNDVAGEIVRPKKRGRPKGSKCGKEIVVEVN 558

Query: 423 XXXXXX--XXXXKKLGRPKGSLNKLKNTVDCNNEGSGAGEIVXXXXXXXXXXSKNKVNNI 480
                       KK GRPKG          C  E      IV          +K K+   
Sbjct: 559 HEVAGAGEIARSKKRGRPKG--------YKCQKE------IVIKRGRPKGTKNKKKILED 604

Query: 481 MEVSKKAASGGDCKIAGPKKCGRPKGSKNKQKNIV---------------------QVSQ 519
            E+  +     + +   PK  GRPKGSKNK+KNI                         +
Sbjct: 605 QELHVQTLVQDEVQNVKPK-LGRPKGSKNKKKNIAGEDGNKLHKEKKRRGWPKGFCLKPK 663

Query: 520 EVAGSADCEIAGPKKCGRPKGS-MKKRKSLV-CASILEGAGGITREGLENKMLSNLCQEH 577
           E+A   D +I   ++ GRPKGS MK +++ V   + +E  G     G + K +       
Sbjct: 664 EIAARLDEKI---ERRGRPKGSGMKPKETAVQLDAKIERRGRPKGAGKKPKEIVVRLDTK 720

Query: 578 IEYTQPVVRGGRPKGSRNKKIKLAFQ 603
           IE      R GRPKGS  K+ ++A Q
Sbjct: 721 IE------RRGRPKGSGKKQKEVASQ 740


>Medtr1g008060.3 | transcription factor jumonji (JmjC) domain
           protein, putative | HC | chr1:708137-717720 | 20130731
          Length = 1701

 Score =  271 bits (694), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 296/819 (36%), Positives = 386/819 (47%), Gaps = 167/819 (20%)

Query: 1   MDETGE-ECRRCGRKAPPGWRCTERALSGKSVCERHF-LYNQKKTERWKEGASGITPKRR 58
           MDETG+ E RRC R    GWRC E+AL GK+ CERH   Y  + +  + E   GI     
Sbjct: 1   MDETGDDESRRCSRNGSGGWRCKEQALPGKTHCERHHEYYKSRNSSSFVEKNGGI----- 55

Query: 59  SGRRKPVDNSENGVV----DDGCKELFG-DPNGTPTVVDEFTGLCGVSEGDAGVNLNLGC 113
                      NGVV    D+G K LFG D +G   VV+ F G+ G  E + GVN  +G 
Sbjct: 56  ----------RNGVVVDDHDNGGKGLFGGDDHG---VVEGFGGVFGDVEVNGGVNAGIGR 102

Query: 114 ESLNLQDKGEEGQQVHSGGFGEGCGRMGQVLGDYGVEYA----EDRNAVAGLG------- 162
           E  NL  +G+  Q      F +  G +GQ LGD GVE+     EDRN   GLG       
Sbjct: 103 ERFNLWQQGDGQQGGR---FEQASGNLGQFLGD-GVEFVGGFVEDRNRAVGLGQQWGGVG 158

Query: 163 ------AFRNVGNEDHGC-VAGRNVCVNDRLGLPSEGIESLIGEEPGFG-----SFQALL 210
                     VG +DHG  V G  VC ND  G  S+GI  LIGE   FG     SFQALL
Sbjct: 159 VFGNGGGVSGVGKDDHGNGVDG--VCGNDSPGFGSDGINGLIGEGGCFGNLYDRSFQALL 216

Query: 211 CKDRGCAEDVIFIGDVTGFEGLSGENTHGFRDEVGGFVENPCFEGEND--SNKEGPGSNY 268
            + R C EDV   G  T F+GL GE+ + FR  VG   +   FEGE +  S    P S+ 
Sbjct: 217 SQGRVCDEDVNLTGGGTSFQGLGGESAYDFRG-VGNLSQCGKFEGEKNVGSILTVPESSN 275

Query: 269 KMSALGFEEEIGLLLSRGGTTNEEARCEALRPLSKRGRPKGSKNENDNKQLSTALDGQSV 328
           KM A G EE + +LLS G + NEEAR EAL+PL+KRGRPKGSKN+   K++    +G++V
Sbjct: 276 KMGAFGVEEGMEMLLSGGVSINEEARGEALKPLAKRGRPKGSKNKIKKKEVDLVTNGETV 335

Query: 329 GGDDNAGTIGMSSVTDLGIEIAVLSGEKDKSSDEVADLGETARAEKSGRP---------- 378
            G  N GT    +V  L  E +V SG+ D+   E  D+G+ AR +K G+P          
Sbjct: 336 CGSANVGT----TVEILETEKSVFSGKADQ---EGVDMGDIARTKKRGQPEDWKRGRHII 388

Query: 379 -----------------------KVSKNKIRRVEHVGNVV--AVKIVGPKKHGRPKSSKC 413
                                  K S N+ + VE V + V  A +I  PKK GR ++SKC
Sbjct: 389 LAVGYEIDGVGEITGPMERGRKSKGSVNEEKNVEEVSSEVAGAGEIARPKKLGRMEASKC 448

Query: 414 RKKNIMXXXXXXXXXXXXXKKLGRPKGSLNKLKNTVDCNNEGSGAGEIVXXXXXXXXXXS 473
            K+ ++             KK GRPKGS    +  ++ NNE  GA               
Sbjct: 449 GKEIVVEVSNDVGGEIVRRKKRGRPKGSKCGKEIVLEVNNEVVGA--------------- 493

Query: 474 KNKVNNIMEVSKKAASGGDCKIAGPKKCGRPKGSKNKQKNIVQVSQEVAGSADCEIAGPK 533
                   EV  + A  G+  IA PKK GR +GSK  ++ +V+VS +VAG    EI  PK
Sbjct: 494 --------EVIIEVAGAGE--IARPKKLGRLEGSKCGKEIVVEVSNDVAG----EIVRPK 539

Query: 534 KCGRPKGSMKKRKSLV-CASILEGAGGITREGLENKMLSNLCQEHIEYTQPVVRGGRPKG 592
           K GRPKGS   ++ +V     + GAG I R     +     CQ+ I     V++ GRPKG
Sbjct: 540 KRGRPKGSKCGKEIVVEVNHEVAGAGEIARSKKRGRPKGYKCQKEI-----VIKRGRPKG 594

Query: 593 SRNKKIKLAFQDMVDEVRFANKESDKATCAVGEEQKDHGSDIGKPIGLDNDKATLASDRD 652
           ++NKK  L  Q++                 V +E ++    +G+P G  N K  +A    
Sbjct: 595 TKNKKKILEDQEL------------HVQTLVQDEVQNVKPKLGRPKGSKNKKKNIAG--- 639

Query: 653 QETPNQTLAQDEVQNDKSSVKPKRGRPKGSKNKMKSIANKARNKFGKVRNMRGRPKGSLR 712
                      E  N     K +RG PKG   K K IA +   K  +    RGRPKGS  
Sbjct: 640 -----------EDGNKLHKEKKRRGWPKGFCLKPKEIAARLDEKIER----RGRPKGSGM 684

Query: 713 KKNETAYCLDSQNERNSLD---GRTSTEAAYRNDVDLHR 748
           K  ETA  LD++ ER       G+   E   R D  + R
Sbjct: 685 KPKETAVQLDAKIERRGRPKGAGKKPKEIVVRLDTKIER 723



 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 135/326 (41%), Gaps = 79/326 (24%)

Query: 303 KRGRPKGSKNENDNKQLSTALDGQSVGGDDNAGTIGMSSVTDLGIEIAVLSGEKDKSSDE 362
           KRGRPKGSK     K++   ++ + VG                  E+ +          E
Sbjct: 469 KRGRPKGSKC---GKEIVLEVNNEVVGA-----------------EVII----------E 498

Query: 363 VADLGETARAEKSGRPKVSKNKIRRVEHVGNVVAVKIVGPKKHGRPKSSKCRKKNIMXXX 422
           VA  GE AR +K GR + SK     V  V N VA +IV PKK GRPK SKC K+ ++   
Sbjct: 499 VAGAGEIARPKKLGRLEGSKCGKEIVVEVSNDVAGEIVRPKKRGRPKGSKCGKEIVVEVN 558

Query: 423 XXXXXX--XXXXKKLGRPKGSLNKLKNTVDCNNEGSGAGEIVXXXXXXXXXXSKNKVNNI 480
                       KK GRPKG          C  E      IV          +K K+   
Sbjct: 559 HEVAGAGEIARSKKRGRPKG--------YKCQKE------IVIKRGRPKGTKNKKKILED 604

Query: 481 MEVSKKAASGGDCKIAGPKKCGRPKGSKNKQKNIV---------------------QVSQ 519
            E+  +     + +   PK  GRPKGSKNK+KNI                         +
Sbjct: 605 QELHVQTLVQDEVQNVKPK-LGRPKGSKNKKKNIAGEDGNKLHKEKKRRGWPKGFCLKPK 663

Query: 520 EVAGSADCEIAGPKKCGRPKGS-MKKRKSLV-CASILEGAGGITREGLENKMLSNLCQEH 577
           E+A   D +I   ++ GRPKGS MK +++ V   + +E  G     G + K +       
Sbjct: 664 EIAARLDEKI---ERRGRPKGSGMKPKETAVQLDAKIERRGRPKGAGKKPKEIVVRLDTK 720

Query: 578 IEYTQPVVRGGRPKGSRNKKIKLAFQ 603
           IE      R GRPKGS  K+ ++A Q
Sbjct: 721 IE------RRGRPKGSGKKQKEVASQ 740