Miyakogusa Predicted Gene

Lj1g3v0715500.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0715500.3 tr|D7MBR7|D7MBR7_ARALL La domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,36.65,2e-18,OS03G0859300 PROTEIN,NULL; LUPUS LA
PROTEIN-RELATED,NULL; seg,NULL,CUFF.26200.3
         (298 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g075120.1 | LA-related protein 6 LA RNA-binding domain pro...   177   7e-45
Medtr5g022790.1 | ATP synthase, A subunit | HC | chr5:9032818-90...   137   9e-33
Medtr5g022790.2 | ATP synthase, A subunit | HC | chr5:9031583-90...   113   3e-25
Medtr5g022790.3 | ATP synthase, A subunit | HC | chr5:9031583-90...   111   8e-25
Medtr1g025920.1 | LA-related protein 6 LA RNA-binding domain pro...    56   4e-08
Medtr1g025920.2 | LA-related protein 6 LA RNA-binding domain pro...    56   4e-08

>Medtr8g075120.1 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr8:31755422-31758254 | 20130731
          Length = 455

 Score =  177 bits (450), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 136/210 (64%), Gaps = 13/210 (6%)

Query: 50  ETENNANGGKRPAWNKPSNAASSSVMGADSWPALSKSAHSPAKSLPEXXXXXXXXXXXXX 109
           E  +N +GGKRP W+KPSNAA+SSVM ADSWPALS+SA +PAKS P              
Sbjct: 52  EDTDNTSGGKRPVWSKPSNAAASSVMDADSWPALSESAKAPAKSPPPPPSPPQELVKLSL 111

Query: 110 NL------QGTGSATPSPQRQVRDNAGVNNT--LPTQQKPYKRXXXXXXXXX-XXXPQHS 160
           +L      QGTGS   SPQ+QV+D AG +N   +PT QKP++R             PQ S
Sbjct: 112 DLSTLPQSQGTGSMLHSPQKQVKDTAGNSNVTSVPTHQKPFRRSNSNASSNGGRQPPQMS 171

Query: 161 GNQGSVAAT-GSHSHNSSQKDHHQQRTGFVSNDHPPQQRNSYRNRNGGGPHQRGDGAHHH 219
             QG VA   GSH+HNS+Q DH   R GFV ND P Q+RNS+RNRNGGG   RGDG+HH 
Sbjct: 172 VPQGFVAVPPGSHNHNSAQIDH-LPRAGFVPNDQP-QRRNSFRNRNGGGLQPRGDGSHHF 229

Query: 220 NYGGRRDQDRGNQDWN-NQRNFNGRDNYMS 248
           N G RRDQDRGNQDWN + RNFN RDNY S
Sbjct: 230 NSGSRRDQDRGNQDWNAHNRNFNNRDNYRS 259


>Medtr5g022790.1 | ATP synthase, A subunit | HC |
           chr5:9032818-9026232 | 20130731
          Length = 670

 Score =  137 bits (346), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 118/219 (53%), Gaps = 33/219 (15%)

Query: 52  ENNANGGKRPAWNKPSNAASSS----VMGADSWPALSKSAHSPAKSLPEXXXXXXXXXXX 107
           E N   GKRPAWN+ S     S    VM A SWPALS SA    KS              
Sbjct: 73  ERNGGTGKRPAWNRSSGNGGVSEVQPVMDAHSWPALSDSARGSTKSESSKGLLDGSSVSP 132

Query: 108 XXNLQGTGSATPSPQRQVRDNAGVNNTLPTQQKPYKRXXXXXXXXXXXXPQHSGNQGSVA 167
              ++ T S+  S QRQV DN  VNN  PT+QK  K              Q S  Q S+A
Sbjct: 133 WQGMESTPSS--SMQRQVGDNVNVNNMAPTRQKSIKHNSSNASSNGGHT-QQSAPQVSIA 189

Query: 168 ATGSHS------------HNSSQKDH------HQQRTGFVSNDHPPQQRNSYRNRNGGGP 209
           ATGSH+            H  S +DH      H QR+GFV +DHP QQRNS+R+RNGG P
Sbjct: 190 ATGSHTSSSRDHTQSPRDHTQSPRDHAQSPRDHTQRSGFVPSDHP-QQRNSFRHRNGG-P 247

Query: 210 HQRGDGAHHH-NYGGRRDQDRGNQDWNNQRNFNGRDNYM 247
           HQRGDG+HHH NYG RRD     QDWN++RN+NGRD ++
Sbjct: 248 HQRGDGSHHHHNYGNRRD-----QDWNSRRNYNGRDMHV 281


>Medtr5g022790.2 | ATP synthase, A subunit | HC |
           chr5:9031583-9026232 | 20130731
          Length = 535

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 88/147 (59%), Gaps = 27/147 (18%)

Query: 120 SPQRQVRDNAGVNNTLPTQQKPYKRXXXXXXXXXXXXPQHSGNQGSVAATGSHS------ 173
           S QRQV DN  VNN  PT+QK  K              Q S  Q S+AATGSH+      
Sbjct: 8   SMQRQVGDNVNVNNMAPTRQKSIKHNSSNASSNGGHT-QQSAPQVSIAATGSHTSSSRDH 66

Query: 174 ------HNSSQKDH------HQQRTGFVSNDHPPQQRNSYRNRNGGGPHQRGDGAHHH-N 220
                 H  S +DH      H QR+GFV +DHP QQRNS+R+RNGG PHQRGDG+HHH N
Sbjct: 67  TQSPRDHTQSPRDHAQSPRDHTQRSGFVPSDHP-QQRNSFRHRNGG-PHQRGDGSHHHHN 124

Query: 221 YGGRRDQDRGNQDWNNQRNFNGRDNYM 247
           YG RRD     QDWN++RN+NGRD ++
Sbjct: 125 YGNRRD-----QDWNSRRNYNGRDMHV 146


>Medtr5g022790.3 | ATP synthase, A subunit | HC |
           chr5:9031583-9028239 | 20130731
          Length = 387

 Score =  111 bits (278), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 87/145 (60%), Gaps = 27/145 (18%)

Query: 122 QRQVRDNAGVNNTLPTQQKPYKRXXXXXXXXXXXXPQHSGNQGSVAATGSHS-------- 173
           QRQV DN  VNN  PT+QK  K              Q S  Q S+AATGSH+        
Sbjct: 10  QRQVGDNVNVNNMAPTRQKSIKHNSSNASSNGGHT-QQSAPQVSIAATGSHTSSSRDHTQ 68

Query: 174 ----HNSSQKDH------HQQRTGFVSNDHPPQQRNSYRNRNGGGPHQRGDGAHHH-NYG 222
               H  S +DH      H QR+GFV +DHP QQRNS+R+RNGG PHQRGDG+HHH NYG
Sbjct: 69  SPRDHTQSPRDHAQSPRDHTQRSGFVPSDHP-QQRNSFRHRNGG-PHQRGDGSHHHHNYG 126

Query: 223 GRRDQDRGNQDWNNQRNFNGRDNYM 247
            RRD     QDWN++RN+NGRD ++
Sbjct: 127 NRRD-----QDWNSRRNYNGRDMHV 146


>Medtr1g025920.1 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr1:8346097-8339214 | 20130731
          Length = 546

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 79/200 (39%), Gaps = 30/200 (15%)

Query: 59  KRPAWNK-PSNAASSS---VMGADSWPALSKSAHSPAKSLPEXXXXXXXXXXXXXNLQGT 114
           K+PAWNK P N  +     VMGA+SWPALS+SA  P K  PE                 T
Sbjct: 130 KKPAWNKQPLNGVAVEIGPVMGAESWPALSESAKIPGKLPPESSSSKIAPPAAVDGSPST 189

Query: 115 GS---ATPSPQRQ-----VRDNAGVNNTLPTQQKPYKRXXXXXXXXXXXXPQHSGNQGSV 166
                 + SPQRQ      + ++  NN LP + +P +R               S      
Sbjct: 190 SQGPIISHSPQRQGSTSNTKSSSMANNNLPNRPRPMRRISGSNIGPCPAQSSLSNPPTPP 249

Query: 167 AATGSHSHNSSQKDHHQQRTGFVSNDHPPQQRNSYRNRN-------GG-------GPHQR 212
                  +       +      + +  P   R+ +RN N       GG       G H R
Sbjct: 250 PLPPYPVYQLPPAVSYPNMLPSIPDSSP---RDHHRNNNWDARPFVGGSSRRGHFGSHPR 306

Query: 213 GDGAHHHN-YGGRRDQDRGN 231
           GDG++H N Y  RR+ DRGN
Sbjct: 307 GDGSYHQNSYSSRREHDRGN 326


>Medtr1g025920.2 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr1:8346097-8339222 | 20130731
          Length = 518

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 79/200 (39%), Gaps = 30/200 (15%)

Query: 59  KRPAWNK-PSNAASSS---VMGADSWPALSKSAHSPAKSLPEXXXXXXXXXXXXXNLQGT 114
           K+PAWNK P N  +     VMGA+SWPALS+SA  P K  PE                 T
Sbjct: 130 KKPAWNKQPLNGVAVEIGPVMGAESWPALSESAKIPGKLPPESSSSKIAPPAAVDGSPST 189

Query: 115 G---SATPSPQRQ-----VRDNAGVNNTLPTQQKPYKRXXXXXXXXXXXXPQHSGNQGSV 166
                 + SPQRQ      + ++  NN LP + +P +R               S      
Sbjct: 190 SQGPIISHSPQRQGSTSNTKSSSMANNNLPNRPRPMRRISGSNIGPCPAQSSLSNPPTPP 249

Query: 167 AATGSHSHNSSQKDHHQQRTGFVSNDHPPQQRNSYRNRN-------GG-------GPHQR 212
                  +       +      + +  P   R+ +RN N       GG       G H R
Sbjct: 250 PLPPYPVYQLPPAVSYPNMLPSIPDSSP---RDHHRNNNWDARPFVGGSSRRGHFGSHPR 306

Query: 213 GDGAHHHN-YGGRRDQDRGN 231
           GDG++H N Y  RR+ DRGN
Sbjct: 307 GDGSYHQNSYSSRREHDRGN 326