Miyakogusa Predicted Gene

Lj1g3v0715500.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0715500.2 Non Characterized Hit- tr|A5C5P2|A5C5P2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.5,9e-19,SUBFAMILY NOT NAMED,NULL; LUPUS LA
PROTEIN-RELATED,NULL; La,RNA-binding protein Lupus La; no
descrip,CUFF.26200.2
         (244 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g022790.3 | ATP synthase, A subunit | HC | chr5:9031583-90...   228   4e-60
Medtr5g022790.1 | ATP synthase, A subunit | HC | chr5:9032818-90...   221   6e-58
Medtr5g022790.2 | ATP synthase, A subunit | HC | chr5:9031583-90...   220   8e-58
Medtr8g075120.1 | LA-related protein 6 LA RNA-binding domain pro...   165   4e-41
Medtr1g025920.1 | LA-related protein 6 LA RNA-binding domain pro...   118   6e-27
Medtr3g114340.1 | LA-related protein 6 LA RNA-binding domain pro...   110   1e-24
Medtr3g114450.1 | LA-related protein 6 LA RNA-binding domain pro...   110   1e-24
Medtr1g025920.2 | LA-related protein 6 LA RNA-binding domain pro...   100   9e-22
Medtr5g088200.1 | LA-related protein 2 LA RNA-binding domain pro...   100   2e-21
Medtr4g086860.1 | LA-related protein 6 LA RNA-binding domain pro...    64   2e-10
Medtr7g117595.3 | LA-related protein 6 LA RNA-binding domain pro...    62   7e-10
Medtr7g117595.1 | LA-related protein 6 LA RNA-binding domain pro...    61   7e-10
Medtr2g019620.1 | LA-related protein 6 LA RNA-binding domain pro...    60   2e-09
Medtr7g117595.2 | LA-related protein 6 LA RNA-binding domain pro...    60   2e-09
Medtr3g114450.3 | LA-related protein 6 LA RNA-binding domain pro...    60   3e-09

>Medtr5g022790.3 | ATP synthase, A subunit | HC |
           chr5:9031583-9028239 | 20130731
          Length = 387

 Score =  228 bits (581), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 147/193 (76%), Gaps = 11/193 (5%)

Query: 60  LDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFV 119
           +DSLRGV FVPP+P   +++  PDPQLH+ IVNQ+DYYFSNENLVKDI+LR+NMD QG+V
Sbjct: 198 IDSLRGVPFVPPMP---LYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWV 254

Query: 120 PINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMP-PVQISNVTA 178
           PI LIAGFKKV  LTDNIQ+++DA+R+SS VEVQGDKIRR+NDW +W+MP PVQ  NVT+
Sbjct: 255 PITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTS 314

Query: 179 PQTVGQ--LTEQVQSISLETTKSDAAGG-----QDVSHSRPLGDFNSQYMLSTSEGTGQV 231
           P+ + Q  L E++++I+LETT  D AGG      +  H+   GD +S   LSTSE TG+V
Sbjct: 315 PEVLNQDMLAEKMRNIALETTIYDGAGGPVVLPDNSEHTPAFGDLSSPLQLSTSEITGEV 374

Query: 232 GIQVSDHSISARN 244
            I  SD S S RN
Sbjct: 375 DIHGSDFSTSRRN 387


>Medtr5g022790.1 | ATP synthase, A subunit | HC |
           chr5:9032818-9026232 | 20130731
          Length = 670

 Score =  221 bits (562), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 141/183 (77%), Gaps = 11/183 (6%)

Query: 60  LDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFV 119
           +DSLRGV FVPP+P   +++  PDPQLH+ IVNQ+DYYFSNENLVKDI+LR+NMD QG+V
Sbjct: 333 IDSLRGVPFVPPMP---LYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWV 389

Query: 120 PINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMP-PVQISNVTA 178
           PI LIAGFKKV  LTDNIQ+++DA+R+SS VEVQGDKIRR+NDW +W+MP PVQ  NVT+
Sbjct: 390 PITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTS 449

Query: 179 PQTVGQ--LTEQVQSISLETTKSDAAGGQDV-----SHSRPLGDFNSQYMLSTSEGTGQV 231
           P+ + Q  L E++++I+LETT  D AGG  V      H+   GD +S   LSTSE TG+V
Sbjct: 450 PEVLNQDMLAEKMRNIALETTIYDGAGGPVVLPDNSEHTPAFGDLSSPLQLSTSEITGEV 509

Query: 232 GIQ 234
            I 
Sbjct: 510 DIH 512


>Medtr5g022790.2 | ATP synthase, A subunit | HC |
           chr5:9031583-9026232 | 20130731
          Length = 535

 Score =  220 bits (561), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 141/183 (77%), Gaps = 11/183 (6%)

Query: 60  LDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFV 119
           +DSLRGV FVPP+P   +++  PDPQLH+ IVNQ+DYYFSNENLVKDI+LR+NMD QG+V
Sbjct: 198 IDSLRGVPFVPPMP---LYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWV 254

Query: 120 PINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMP-PVQISNVTA 178
           PI LIAGFKKV  LTDNIQ+++DA+R+SS VEVQGDKIRR+NDW +W+MP PVQ  NVT+
Sbjct: 255 PITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTS 314

Query: 179 PQTVGQ--LTEQVQSISLETTKSDAAGGQDV-----SHSRPLGDFNSQYMLSTSEGTGQV 231
           P+ + Q  L E++++I+LETT  D AGG  V      H+   GD +S   LSTSE TG+V
Sbjct: 315 PEVLNQDMLAEKMRNIALETTIYDGAGGPVVLPDNSEHTPAFGDLSSPLQLSTSEITGEV 374

Query: 232 GIQ 234
            I 
Sbjct: 375 DIH 377


>Medtr8g075120.1 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr8:31755422-31758254 | 20130731
          Length = 455

 Score =  165 bits (417), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 105/146 (71%), Gaps = 5/146 (3%)

Query: 64  RGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVPINL 123
           R V FV PI  +A+FF PPD +L T IVNQ+DYYFS+ NL  D YL++NMDDQG+VP+NL
Sbjct: 314 RSVPFVQPIS-SAIFFPPPDSELQTKIVNQIDYYFSDLNLNNDTYLKRNMDDQGWVPLNL 372

Query: 124 IAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMPPVQISNVTAPQTVG 183
           IAGF KVKLLTDNIQIV+DAVR+SS VEVQ DKIRRRN    W+    Q  NV   Q   
Sbjct: 373 IAGFNKVKLLTDNIQIVVDAVRTSSVVEVQDDKIRRRN----WITLSSQFHNVNGSQIAA 428

Query: 184 QLTEQVQSISLETTKSDAAGGQDVSH 209
           QL + +Q+I LET K+ A G   VS+
Sbjct: 429 QLAKNIQNIDLETNKNGAFGELHVSN 454


>Medtr1g025920.1 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr1:8346097-8339214 | 20130731
          Length = 546

 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 75/102 (73%)

Query: 60  LDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFV 119
           LD  RG+   P +P  A FF   +  L  +IVNQ+DYYFS+ NL  D +L+ NMD++G+V
Sbjct: 382 LDPFRGMPVFPHMPSPATFFPAAESSLSNVIVNQIDYYFSDINLANDEFLKSNMDEEGWV 441

Query: 120 PINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRN 161
           PI LIA F +VK LT NIQ++LD++R+S+ V+VQGDK+RRRN
Sbjct: 442 PITLIANFPRVKNLTSNIQLILDSMRNSNVVDVQGDKLRRRN 483


>Medtr3g114340.1 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr3:53401536-53399026 | 20130731
          Length = 432

 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 78/115 (67%), Gaps = 5/115 (4%)

Query: 60  LDSLRGVSFVPPIPPNAMFFQPPD-----PQLHTMIVNQVDYYFSNENLVKDIYLRQNMD 114
            +   G+ F+   PP AMFF   +          +I+ Q+DYYFS+ NL  D +L+ NMD
Sbjct: 265 FEPFGGMPFLTHPPPPAMFFPVAEETPPTTPPTNIILKQIDYYFSDVNLTNDEFLKSNMD 324

Query: 115 DQGFVPINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMP 169
           + G+VP++LIA F +VK LT+NI+++LD++R+SS VEV GDK+R+R +W R+L P
Sbjct: 325 EHGWVPVSLIANFPRVKNLTNNIELILDSLRNSSVVEVNGDKLRKRKEWARFLSP 379


>Medtr3g114450.1 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr3:53444494-53441023 | 20130731
          Length = 471

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 78/115 (67%), Gaps = 5/115 (4%)

Query: 60  LDSLRGVSFVPPIPPNAMFFQPPD-----PQLHTMIVNQVDYYFSNENLVKDIYLRQNMD 114
            +   G+ F+   PP AMFF   +          +I+ Q+DYYFS+ NL  D +L+ NMD
Sbjct: 335 FEPFGGMPFLTHPPPPAMFFPVAEETPPTTPPTNIILKQIDYYFSDVNLTNDEFLKSNMD 394

Query: 115 DQGFVPINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMP 169
           + G+VP++LIA F +VK LT+NI+++LD++R+SS VEV GDK+R+R +W R+L P
Sbjct: 395 EHGWVPVSLIANFPRVKNLTNNIELILDSLRNSSVVEVNGDKLRKRKEWARFLSP 449


>Medtr1g025920.2 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr1:8346097-8339222 | 20130731
          Length = 518

 Score =  100 bits (250), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 67/94 (71%)

Query: 60  LDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFV 119
           LD  RG+   P +P  A FF   +  L  +IVNQ+DYYFS+ NL  D +L+ NMD++G+V
Sbjct: 382 LDPFRGMPVFPHMPSPATFFPAAESSLSNVIVNQIDYYFSDINLANDEFLKSNMDEEGWV 441

Query: 120 PINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQ 153
           PI LIA F +VK LT NIQ++LD++R+S+ V+VQ
Sbjct: 442 PITLIANFPRVKNLTSNIQLILDSMRNSNVVDVQ 475


>Medtr5g088200.1 | LA-related protein 2 LA RNA-binding domain
           protein | HC | chr5:38241687-38234903 | 20130731
          Length = 911

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 9/135 (6%)

Query: 71  PIPPNAMFFQPPDPQ---LHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVPINLIAGF 127
           P PP     Q P P+   L   I+ Q++YYFS+ENL  D YL   MDDQG+VPI+ +A F
Sbjct: 296 PYPPVNSAPQSPTPETQSLRASILKQIEYYFSDENLHNDRYLIGLMDDQGWVPISTVADF 355

Query: 128 KKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMPPVQISNVTAPQTVGQLT- 186
           K+VK ++ +I  ++D +++S  VEVQ DKIR+RN+W +W    +Q S+  +  +V Q+  
Sbjct: 356 KRVKRMSTDIPFIVDVLQNSDNVEVQDDKIRKRNNWSKW----IQTSSGNSGSSVAQVQQ 411

Query: 187 -EQVQSISLETTKSD 200
            + V+S +     SD
Sbjct: 412 DQHVESTANSCQNSD 426


>Medtr4g086860.1 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr4:34040137-34037050 | 20130731
          Length = 404

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 18/159 (11%)

Query: 74  PNAMFFQPP------DPQLHTMIVNQVDYYFSNENLVKDIYLRQNM--DDQGFVPINLIA 125
           PNA   QP       +P L   IV QV+Y FS+ +L+ +   ++ M  D +G+VPI +IA
Sbjct: 81  PNANVSQPNCSKNVLNPDLQQKIVKQVEYQFSDLSLLANESFQKQMNKDPEGYVPITVIA 140

Query: 126 GFKKVKLLTDNIQIVLDAVRSSSA--VEVQGDKIRRRNDWRRWLMPPVQISNVTAPQTVG 183
             KK+K L +NI ++  A+R SS   +   G K++R++ +       +    V A     
Sbjct: 141 STKKIKSLVNNIHLLTQAIRHSSKLVLSADGKKVKRKHPFAEKEKEELMSRTVVAENLPD 200

Query: 184 QLTEQ-VQSI-----SLETTKSDAAGGQDVSHSRPLGDF 216
             + Q +Q I     S++T +      Q+ + SRP GDF
Sbjct: 201 DHSHQNLQKIFGVVGSIKTIR--ICHPQEPNSSRPKGDF 237


>Medtr7g117595.3 | LA-related protein 6 LA RNA-binding domain
           protein, putative | HC | chr7:48763422-48774734 |
           20130731
          Length = 424

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 83  DPQLHTMIVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIV 140
           D Q H  I+ QV+YYFS+ NL    +L +  N D +GFVPI+++A FKK+K L  +   +
Sbjct: 111 DEQPHHKILKQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSQL 170

Query: 141 LDAVRSSSAVEVQ--GDKIRRR 160
            + +R+SS + V   G KI+R+
Sbjct: 171 ANVLRNSSKLVVSEDGKKIKRQ 192


>Medtr7g117595.1 | LA-related protein 6 LA RNA-binding domain
           protein, putative | HC | chr7:48763422-48774734 |
           20130731
          Length = 440

 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 83  DPQLHTMIVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIV 140
           D Q H  I+ QV+YYFS+ NL    +L +  N D +GFVPI+++A FKK+K L  +   +
Sbjct: 111 DEQPHHKILKQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSQL 170

Query: 141 LDAVRSSSAVEVQ--GDKIRRR 160
            + +R+SS + V   G KI+R+
Sbjct: 171 ANVLRNSSKLVVSEDGKKIKRQ 192


>Medtr2g019620.1 | LA-related protein 6 LA RNA-binding domain
           protein, putative | HC | chr2:6438990-6443888 | 20130731
          Length = 406

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 86  LHTMIVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIVLDA 143
           L   I+ QV+YYFS+ENL  D Y+      + +GFVPI  IA F+K+K LT +   +  A
Sbjct: 103 LKLKIIKQVEYYFSDENLPTDKYMLSLVKRNKEGFVPIPAIASFRKMKRLTRDHLFIAAA 162

Query: 144 VRSSSAVEVQGD--KIRRRNDWR 164
           ++ SS + V GD  +++R N  R
Sbjct: 163 LKESSLLVVSGDGKRVKRLNPLR 185


>Medtr7g117595.2 | LA-related protein 6 LA RNA-binding domain
           protein, putative | HC | chr7:48763422-48773797 |
           20130731
          Length = 363

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 83  DPQLHTMIVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIV 140
           D Q H  I+ QV+YYFS+ NL    +L +  N D +GFVPI+++A FKK+K L  +   +
Sbjct: 111 DEQPHHKILKQVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALITSHSQL 170

Query: 141 LDAVRSSSAVEVQ--GDKIRRR 160
            + +R+SS + V   G KI+R+
Sbjct: 171 ANVLRNSSKLVVSEDGKKIKRQ 192


>Medtr3g114450.3 | LA-related protein 6 LA RNA-binding domain
           protein | HC | chr3:53444494-53442560 | 20130731
          Length = 411

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 5/76 (6%)

Query: 60  LDSLRGVSFVPPIPPNAMFFQPPD-----PQLHTMIVNQVDYYFSNENLVKDIYLRQNMD 114
            +   G+ F+   PP AMFF   +          +I+ Q+DYYFS+ NL  D +L+ NMD
Sbjct: 335 FEPFGGMPFLTHPPPPAMFFPVAEETPPTTPPTNIILKQIDYYFSDVNLTNDEFLKSNMD 394

Query: 115 DQGFVPINLIAGFKKV 130
           + G+VP++LIA F +V
Sbjct: 395 EHGWVPVSLIANFPRV 410