Miyakogusa Predicted Gene

Lj1g3v0672680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0672680.1 Non Characterized Hit- tr|I3T354|I3T354_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,96.88,0,L30e-like,NULL; NUCLEARHMG,H/ACA ribonucleoprotein
complex, subunit Nhp2, eukaryote; L7ARS6FAMILY,Ri,CUFF.26161.1
         (128 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0011s0330.1 | ribosomal protein L7Ae/L30e/S12e/Gadd45 famil...   231   1e-61
Medtr4g114330.1 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family...   224   2e-59
Medtr4g112780.1 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family...    50   6e-07

>Medtr0011s0330.1 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family
           protein | HC | scaffold0011:248301-244968 | 20130731
          Length = 128

 Score =  231 bits (589), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/128 (89%), Positives = 116/128 (90%)

Query: 1   MTGETVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGETVNPKAYPLADAQLTITIMDLVQQA+NYKQLKKGANEATKTLNRGISEFVVMAADT
Sbjct: 1   MTGETVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADT 60

Query: 61  XXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
                       AEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128


>Medtr4g114330.1 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family
           protein | HC | chr4:46987298-46989559 | 20130731
          Length = 128

 Score =  224 bits (570), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/128 (87%), Positives = 113/128 (88%)

Query: 1   MTGETVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADT 60
           MTGE VNPKAYPLADAQLTITIMDLVQQA+NYKQLKKGANEATKTLNRGISEFVVMAAD 
Sbjct: 1   MTGEAVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADA 60

Query: 61  XXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120
                       AEDKNVPYVFV SKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK
Sbjct: 61  EPLEILLHLPLLAEDKNVPYVFVTSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLK 120

Query: 121 DAIEKLLI 128
           DAIEKLLI
Sbjct: 121 DAIEKLLI 128


>Medtr4g112780.1 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family
           protein | HC | chr4:45935852-45933331 | 20130731
          Length = 153

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 8   PKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADTXXXXXXX 67
           P A PLA  +L+   + LV++A+  K +K+G  E  K++ RG     ++A +        
Sbjct: 21  PIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVCIIAGNISPIDVIT 80

Query: 68  XXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEG-SQLKSQIQQ 118
                 EDK++PYV+V SK+ L  A    RP     V T     +L  ++Q+
Sbjct: 81  HVPILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELSQEVQE 132