Miyakogusa Predicted Gene

Lj1g3v0639770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0639770.1 Non Characterized Hit- tr|A5BXX4|A5BXX4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.95,1.99965e-42,DUF659,Domain of unknown function DUF659;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Ribonucle,CUFF.26088.1
         (212 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g078930.1 | hypothetical protein | LC | chr7:29889325-2989...    49   4e-06

>Medtr7g078930.1 | hypothetical protein | LC |
           chr7:29889325-29890440 | 20130731
          Length = 129

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 121 FIYNHLWTVSLMKKFTNDRELFRPGITRFATQFLPLQEIVKQKDGL 166
           +IYNH  +++LM+K T + EL R G+TRFAT FL LQ + K K  L
Sbjct: 83  YIYNHTSSLNLMRKKTINVELVRHGVTRFATTFLMLQRLPKLKSKL 128