Miyakogusa Predicted Gene

Lj1g3v0627680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0627680.1 tr|G7KDW6|G7KDW6_MEDTR DNA polymerase beta
OS=Medicago truncatula GN=MTR_5g040170 PE=4 SV=1,81.94,0,no
description,NULL; no description,DNA-directed DNA polymerase, family
X, beta-like, N-terminal; se,CUFF.26107.1
         (519 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g039450.1 | DNA polymerase lambda-like protein | HC | chr7...   835   0.0  
Medtr5g040170.1 | DNA polymerase lambda-like protein | HC | chr5...   832   0.0  
Medtr5g035500.1 | hypothetical protein | HC | chr5:15437545-1543...    54   3e-07

>Medtr7g039450.1 | DNA polymerase lambda-like protein | HC |
           chr7:14670163-14663808 | 20130731
          Length = 531

 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/504 (79%), Positives = 441/504 (87%), Gaps = 2/504 (0%)

Query: 18  FKIWKQRLVQMGAVIEDRFSKRVTHLFAMDSHALLHELDSHRLSRFKGRVLLYQWLEDSL 77
            +IWKQR+VQMGAVIEDRFSKRVTH+FA+DSH LLHE D  RLSRFKG +LLYQWLEDSL
Sbjct: 28  LQIWKQRMVQMGAVIEDRFSKRVTHVFAVDSHTLLHEFDGQRLSRFKGSLLLYQWLEDSL 87

Query: 78  KSGEKLPEDMYVLKLDTQDQVIP--DKSVDPEPTDRSISSDPQRLQSKKMKSSSEDTQIL 135
           KSGEK  ED+YVLKLD Q + I   D S+DPEP D S+SS+PQ+LQ+KK+KSSSED +I+
Sbjct: 88  KSGEKESEDLYVLKLDPQGEGINELDTSLDPEPIDGSLSSEPQQLQNKKIKSSSEDAEIV 147

Query: 136 NLDSNEDRGENXXXXXXXXXXXXGEVDSLSYANTRLQHLDAENEASSLPYCPPDLNKKIT 195
           NL SNEDR EN            GEV+ L+  ++R QHLD+EN ASSLPYCPPDLNKKI 
Sbjct: 148 NLKSNEDRRENAPLSLANTASSHGEVEHLNCVDSRPQHLDSENAASSLPYCPPDLNKKII 207

Query: 196 EIFGKLINIYRALGDDRRSFSYHKAIAVIEKLPFKIESTDQLKNLPSIGKSMKDHIQEII 255
           EIFGKL+NIYRALG+DRRSFSY+KAI+VIEKLPFKIES DQ+KNLPSIGKSM+DHIQEII
Sbjct: 208 EIFGKLVNIYRALGEDRRSFSYYKAISVIEKLPFKIESADQIKNLPSIGKSMEDHIQEII 267

Query: 256 TTGKLSKLEHFETDEKVRTISLFGEVWGVGPATSLKLYEKGHRTLDDLRNDDSLTNAQKL 315
           TTGKLSKLEHFETDEKV+TISLFGEVWG+GPAT+LKLYEKGHRTLDDLRNDDSLTNAQKL
Sbjct: 268 TTGKLSKLEHFETDEKVQTISLFGEVWGIGPATALKLYEKGHRTLDDLRNDDSLTNAQKL 327

Query: 316 GLKYFDDIRQRIPRHEVQEMERILQKVGEDVLPGVLIVCGGSYRRGKTTCGDIDIIITHP 375
           GLKYFDDIR RIPRHEVQEME+ILQKVGE+VLPGV I+CGGSYRRGK TCGDIDII+THP
Sbjct: 328 GLKYFDDIRHRIPRHEVQEMEQILQKVGENVLPGVTIICGGSYRRGKATCGDIDIIVTHP 387

Query: 376 DGKSHKGFLPKFVKHLKDMNFLREDLIFSNHSEEGTDSGVDTYFGFCTYPGRELRHRIDL 435
           DG SHKGFLPKFVK LKDM+FLREDLI+S HSEEGTDSGVDTYFGFCTYPGRELRHRIDL
Sbjct: 388 DGTSHKGFLPKFVKRLKDMSFLREDLIYSTHSEEGTDSGVDTYFGFCTYPGRELRHRIDL 447

Query: 436 KVYPRDIYAFGLVAWTGNDVLNRRLRLEADSKGFRLDDTGLFPATMXXXXXXXXXXXXXL 495
           KVYPRDIYAFGLVAWTGNDVLNRRLR +A+SKGFRLDDTGLFPA               +
Sbjct: 448 KVYPRDIYAFGLVAWTGNDVLNRRLRQQAESKGFRLDDTGLFPAIQGSGGKRGTKGTANM 507

Query: 496 KFDTEKEVFDFLGFPWLEPHERNL 519
           K  TEKEVF+FLGFPWLEPHERNL
Sbjct: 508 KLYTEKEVFEFLGFPWLEPHERNL 531


>Medtr5g040170.1 | DNA polymerase lambda-like protein | HC |
           chr5:17674798-17682254 | 20130731
          Length = 531

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/504 (79%), Positives = 441/504 (87%), Gaps = 2/504 (0%)

Query: 18  FKIWKQRLVQMGAVIEDRFSKRVTHLFAMDSHALLHELDSHRLSRFKGRVLLYQWLEDSL 77
            +IWKQR+VQMGAVIEDRFSKRVTH+FA+DSH LLHE DS RLSRFKG +LLYQWLEDSL
Sbjct: 28  LQIWKQRMVQMGAVIEDRFSKRVTHVFAVDSHTLLHEFDSQRLSRFKGSLLLYQWLEDSL 87

Query: 78  KSGEKLPEDMYVLKLDTQDQVIP--DKSVDPEPTDRSISSDPQRLQSKKMKSSSEDTQIL 135
           KSGEK  ED+YVLKLD Q + I   D S+DPEP D S+SS+PQ+LQ+KK+KSSSED +I+
Sbjct: 88  KSGEKESEDLYVLKLDPQGEGINEIDTSLDPEPIDGSLSSEPQQLQNKKIKSSSEDAEIV 147

Query: 136 NLDSNEDRGENXXXXXXXXXXXXGEVDSLSYANTRLQHLDAENEASSLPYCPPDLNKKIT 195
           NL SNEDR EN            GEV+ L+  ++R QHLD+EN ASSLPYCPPDLNKKI 
Sbjct: 148 NLKSNEDRRENAPLSLANTASSHGEVEHLNCVDSRPQHLDSENAASSLPYCPPDLNKKII 207

Query: 196 EIFGKLINIYRALGDDRRSFSYHKAIAVIEKLPFKIESTDQLKNLPSIGKSMKDHIQEII 255
           EIFGKL+NIYRALG+DRRSFSY+KAI+VIEKLPFKIES DQ+KNLPSIGKSM+DHIQEII
Sbjct: 208 EIFGKLVNIYRALGEDRRSFSYYKAISVIEKLPFKIESADQIKNLPSIGKSMEDHIQEII 267

Query: 256 TTGKLSKLEHFETDEKVRTISLFGEVWGVGPATSLKLYEKGHRTLDDLRNDDSLTNAQKL 315
           TTGKLSKLEHFETDEKV+TISLFGEVWG+GPAT+LKLYEKGHRTLDDLRNDDSLTNAQKL
Sbjct: 268 TTGKLSKLEHFETDEKVQTISLFGEVWGIGPATALKLYEKGHRTLDDLRNDDSLTNAQKL 327

Query: 316 GLKYFDDIRQRIPRHEVQEMERILQKVGEDVLPGVLIVCGGSYRRGKTTCGDIDIIITHP 375
           GLKYFDDIR RIPRHEVQEME+ILQKVG +VLPGV I+CGGSYRRGK TCGDIDII+THP
Sbjct: 328 GLKYFDDIRHRIPRHEVQEMEQILQKVGGNVLPGVTIICGGSYRRGKATCGDIDIIVTHP 387

Query: 376 DGKSHKGFLPKFVKHLKDMNFLREDLIFSNHSEEGTDSGVDTYFGFCTYPGRELRHRIDL 435
           DG SHKGFLPKFVK LKDM+FLREDLI+S HSEEGTDSGVDTYFGFCTYPGRELRHRIDL
Sbjct: 388 DGTSHKGFLPKFVKRLKDMSFLREDLIYSTHSEEGTDSGVDTYFGFCTYPGRELRHRIDL 447

Query: 436 KVYPRDIYAFGLVAWTGNDVLNRRLRLEADSKGFRLDDTGLFPATMXXXXXXXXXXXXXL 495
           KVYPR+IYAFGLVAWTGNDVLNRRLR +A+SKGFRLDDTGLFPA               +
Sbjct: 448 KVYPREIYAFGLVAWTGNDVLNRRLRQQAESKGFRLDDTGLFPAIQGSGGKRGTKGTANM 507

Query: 496 KFDTEKEVFDFLGFPWLEPHERNL 519
           K  TEKEVF+FLGFPWLEPHERNL
Sbjct: 508 KLYTEKEVFEFLGFPWLEPHERNL 531


>Medtr5g035500.1 | hypothetical protein | HC |
          chr5:15437545-15437079 | 20130731
          Length = 59

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 29/36 (80%)

Query: 60 LSRFKGRVLLYQWLEDSLKSGEKLPEDMYVLKLDTQ 95
          L  FK R+LLYQWLEDSLKS +KL ED+ VLKLD Q
Sbjct: 8  LLTFKQRILLYQWLEDSLKSAQKLSEDLSVLKLDPQ 43