Miyakogusa Predicted Gene

Lj1g3v0627420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0627420.1 tr|G7I7Z0|G7I7Z0_MEDTR Cleavage and
polyadenylation specificity factor subunit OS=Medicago
truncatul,63.53,6e-19,IMMUNOGLOBULIN-BINDING PROTEIN 1,NULL;
IMMUNOGLOBULIN-BINDING PROTEIN 1,TAP42-like protein;
TAP42,TA,gene.g29974.t1.1
         (137 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g091640.1 | PP2A regulatory subunit TAP46-like protein | H...   215   8e-57
Medtr1g050518.1 | PP2A regulatory subunit TAP46-like protein | H...    97   6e-21

>Medtr3g091640.1 | PP2A regulatory subunit TAP46-like protein | HC |
           chr3:41711352-41715663 | 20130731
          Length = 404

 Score =  215 bits (548), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 124/140 (88%), Gaps = 5/140 (3%)

Query: 1   MGDTRVEELPLPALFEQAREIHATA---NADQKVVKKGYETLQKCEDMVNKLGLFSSNET 57
           MG+ ++E++PLPALFEQAR+IHATA    ADQ++VKKG E L KCE+MVN+LGLFS+NET
Sbjct: 1   MGEMKMEDMPLPALFEQARKIHATATESGADQELVKKGCEALNKCENMVNRLGLFSANET 60

Query: 58  KEDISTGNLKYILALVPFYLAEMTEQIAQDDRIQIVKASQTKLKEFISFCEAMELVPKEE 117
           KEDIST +LKYIL  VP+YLAE+TE+IA DDRI I+KASQ KLKEFISFCEAMELVPKEE
Sbjct: 61  KEDISTTDLKYIL--VPYYLAELTEKIAHDDRIPILKASQAKLKEFISFCEAMELVPKEE 118

Query: 118 LESYTQGAPKSVADQRARKL 137
           LESY QG PK+VADQRA+K+
Sbjct: 119 LESYMQGVPKAVADQRAKKI 138


>Medtr1g050518.1 | PP2A regulatory subunit TAP46-like protein | HC |
           chr1:19528724-19531081 | 20130731
          Length = 344

 Score = 96.7 bits (239), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 58/76 (76%), Gaps = 10/76 (13%)

Query: 66  LKYILAL----VPFYLAEMTEQIAQDDRIQIVKASQTKLKEFISFCEAMELVPKEELESY 121
           ++Y+  L    VP+YLAE+TE+IA DDRI I+KASQ KLKEFISFCEAMELVPKE LESY
Sbjct: 10  IEYLFHLCDVQVPYYLAELTEKIAHDDRIPILKASQAKLKEFISFCEAMELVPKEGLESY 69

Query: 122 TQGAPKSVADQRARKL 137
                  V DQRARK+
Sbjct: 70  I------VTDQRARKI 79