Miyakogusa Predicted Gene

Lj1g3v0579550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0579550.1 Non Characterized Hit- tr|I3SPX8|I3SPX8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,82.98,0.00000000000006,CCT,CCT domain,CUFF.26224.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g128930.1 | zinc finger constans-like protein | HC | chr4:...    70   3e-13
Medtr7g018170.1 | zinc finger constans-like protein | HC | chr7:...    52   2e-07
Medtr3g105710.1 | zinc finger constans-like protein | HC | chr3:...    49   1e-06
Medtr1g013450.1 | zinc finger constans-like protein | HC | chr1:...    47   3e-06

>Medtr4g128930.1 | zinc finger constans-like protein | HC |
           chr4:53656301-53658369 | 20130731
          Length = 375

 Score = 70.5 bits (171), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 8/59 (13%)

Query: 2   VVSGG-----GGSQPATQLCGMDREARVLRYREKRKNRKFEKTIFHPGYDLMSSYANKR 55
           +VSGG      G Q ATQLCGMDREARV+RYREKRKNRKFEKTI    Y    +YA  R
Sbjct: 275 MVSGGVNSSNQGVQGATQLCGMDREARVMRYREKRKNRKFEKTI---RYASRKAYAETR 330


>Medtr7g018170.1 | zinc finger constans-like protein | HC |
           chr7:5837191-5833561 | 20130731
          Length = 396

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 6   GGGSQPATQLCGMDREARVLRYREKRKNRKFEKTIFHPGYDLMSSYANKR 55
           G   Q ++    MDREARVLRYREK+K RKFEKTI    Y    +YA  R
Sbjct: 313 GPSIQMSSHFSPMDREARVLRYREKKKTRKFEKTI---RYASRKAYAETR 359


>Medtr3g105710.1 | zinc finger constans-like protein | HC |
           chr3:48758302-48759914 | 20130731
          Length = 290

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 28/43 (65%), Gaps = 5/43 (11%)

Query: 3   VSGGGGSQPATQLCG-----MDREARVLRYREKRKNRKFEKTI 40
           V     + P    CG     +DREARV+RYREKRKNR+FEKTI
Sbjct: 210 VVPDANTVPEISNCGYGTVAVDREARVMRYREKRKNRRFEKTI 252


>Medtr1g013450.1 | zinc finger constans-like protein | HC |
           chr1:3420903-3419850 | 20130731
          Length = 316

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 25/29 (86%)

Query: 12  ATQLCGMDREARVLRYREKRKNRKFEKTI 40
           A  +  ++REARV+RYREKRKNR+FEKTI
Sbjct: 247 AVPMTAVEREARVMRYREKRKNRRFEKTI 275