Miyakogusa Predicted Gene

Lj1g3v0579480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0579480.1 Non Characterized Hit- tr|D7SIP1|D7SIP1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,48,0.0002,seg,NULL,gene.g29824.t1.1
         (225 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g461480.1 | hypothetical protein | HC | chr2:25388385-2538...   157   1e-38

>Medtr2g461480.1 | hypothetical protein | HC |
           chr2:25388385-25385593 | 20130731
          Length = 332

 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/225 (46%), Positives = 131/225 (58%), Gaps = 40/225 (17%)

Query: 1   MQRLFNEGCRNTNASGGSSDFSKGKN-CAPGMNVMDHDMPELVVFIQEDHQQFVKDICID 59
           +Q+LFN      N+S   SDF K  N  +  MNV+D++MPELVVFIQED QQ+VKDICID
Sbjct: 45  IQKLFNVDNCTDNSSSDLSDFIKSNNFSSTSMNVLDYNMPELVVFIQEDQQQYVKDICID 104

Query: 60  KVVSPEGKCQ-SEEYELDHEIV-----TCEGEEAE------------------------- 88
           + V PE KC  + E +L+HE++        G ++E                         
Sbjct: 105 REVLPERKCDVNSESDLNHEVMETISSNSFGSDSECSSQHISFKEAMKVHGFRNLMKSEM 164

Query: 89  ELDSTNNHKISID-HPIKKTASETLREAFRKETDFSRSFKNWQINSFLAAIGSKVEFPHC 147
           ELD  N  +ISID H   +TASETLREAF++E +FSRSF+NWQ  S     GS+VEFPH 
Sbjct: 165 ELDLGN--RISIDQHFPSRTASETLREAFQRERNFSRSFENWQRTS-----GSRVEFPHS 217

Query: 148 AECPQVTQESMSRTETSNAHSITGSGKRQVDYPHETSSIALASQS 192
            EC QVT  +M R + S   SIT S  +QVD   ETS+ A  SQS
Sbjct: 218 RECLQVTDSNMYRPDISYLQSITSSDNKQVDDHQETSNSASDSQS 262