Miyakogusa Predicted Gene

Lj1g3v0579450.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0579450.1 tr|B9HMA1|B9HMA1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1085726 PE=4
SV=1,76.81,8e-19,CALCIUM-BINDING PROTEIN 39-RELATED,Mo25-like;
Mo25,Mo25-like; seg,NULL; ARM repeat,Armadillo-type
fo,NODE_33875_length_1349_cov_36.931061.path1.1
         (69 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g021040.1 | structural constituent of ribosome protein, pu...    78   2e-15
Medtr0003s0650.1 | structural constituent of ribosome protein, p...    67   5e-12
Medtr2g021040.2 | structural constituent of ribosome protein, pu...    58   2e-09
Medtr2g021040.3 | structural constituent of ribosome protein, pu...    58   2e-09
Medtr2g026050.1 | calcium-binding protein | HC | chr2:9393837-94...    54   5e-08
Medtr4g133600.1 | calcium-binding protein | HC | chr4:55883735-5...    51   3e-07
Medtr4g133600.2 | calcium-binding protein | HC | chr4:55884215-5...    50   3e-07

>Medtr2g021040.1 | structural constituent of ribosome protein,
           putative | HC | chr2:7107798-7113369 | 20130731
          Length = 339

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 44/69 (63%)

Query: 1   MKHYILEVYHLKFIMTLLRDSSKNIQLSAFHIFKVFVANPNKPQXXXXXXXXXXXXXXXX 60
           MK YILEV  LK +MTLL DSSKNIQLSAFHIFK+FVANPNKP+                
Sbjct: 249 MKRYILEVRFLKVMMTLLTDSSKNIQLSAFHIFKIFVANPNKPRDVKIILGKNKGKLLEL 308

Query: 61  XXXXSPGKG 69
               SPGKG
Sbjct: 309 LHNLSPGKG 317


>Medtr0003s0650.1 | structural constituent of ribosome protein,
           putative | HC | scaffold0003:360290-359256 | 20130731
          Length = 344

 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 36/44 (81%)

Query: 1   MKHYILEVYHLKFIMTLLRDSSKNIQLSAFHIFKVFVANPNKPQ 44
           MK YI +V +LK +MTLL DSSK IQLSAF IFK FVANPNKP+
Sbjct: 253 MKRYISQVRYLKVVMTLLTDSSKKIQLSAFDIFKFFVANPNKPR 296


>Medtr2g021040.2 | structural constituent of ribosome protein,
           putative | HC | chr2:7107810-7113276 | 20130731
          Length = 285

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 30/35 (85%)

Query: 1   MKHYILEVYHLKFIMTLLRDSSKNIQLSAFHIFKV 35
           MK YILEV  LK +MTLL DSSKNIQLSAFHIFKV
Sbjct: 249 MKRYILEVRFLKVMMTLLTDSSKNIQLSAFHIFKV 283


>Medtr2g021040.3 | structural constituent of ribosome protein,
           putative | HC | chr2:7107810-7113276 | 20130731
          Length = 316

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 30/35 (85%)

Query: 1   MKHYILEVYHLKFIMTLLRDSSKNIQLSAFHIFKV 35
           MK YILEV  LK +MTLL DSSKNIQLSAFHIFKV
Sbjct: 249 MKRYILEVRFLKVMMTLLTDSSKNIQLSAFHIFKV 283


>Medtr2g026050.1 | calcium-binding protein | HC |
           chr2:9393837-9400795 | 20130731
          Length = 337

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 32/43 (74%)

Query: 1   MKHYILEVYHLKFIMTLLRDSSKNIQLSAFHIFKVFVANPNKP 43
           M  Y+    +L+ +M LLR+SSK+IQ+ AFH+FK+F AN NKP
Sbjct: 249 MTQYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKP 291


>Medtr4g133600.1 | calcium-binding protein | HC |
           chr4:55883735-55887888 | 20130731
          Length = 383

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%)

Query: 1   MKHYILEVYHLKFIMTLLRDSSKNIQLSAFHIFKVFVANPNKP 43
           M  Y+    +L+ +M L+R+SSK+IQ+ AFH+FK+F AN  KP
Sbjct: 293 MTRYVSSRDNLRILMNLMRESSKSIQIEAFHVFKLFAANQKKP 335


>Medtr4g133600.2 | calcium-binding protein | HC |
           chr4:55884215-55888218 | 20130731
          Length = 298

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 31/43 (72%)

Query: 1   MKHYILEVYHLKFIMTLLRDSSKNIQLSAFHIFKVFVANPNKP 43
           M  Y+    +L+ +M L+R+SSK+IQ+ AFH+FK+F AN  KP
Sbjct: 208 MTRYVSSRDNLRILMNLMRESSKSIQIEAFHVFKLFAANQKKP 250