Miyakogusa Predicted Gene

Lj1g3v0579440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0579440.1 Non Characterized Hit- tr|Q9ZVW0|Q9ZVW0_ARATH
Putative retroelement pol polyprotein OS=Arabidopsis
t,32.61,4e-19,seg,NULL,gene.g29817.t1.1
         (213 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g039280.1 | hypothetical protein | LC | chr7:14583454-1458...    70   1e-12
Medtr4g048330.1 | hypothetical protein | LC | chr4:17127732-1712...    66   3e-11
Medtr4g461050.1 | hypothetical protein | LC | chr4:22466787-2246...    58   5e-09

>Medtr7g039280.1 | hypothetical protein | LC |
           chr7:14583454-14584237 | 20130731
          Length = 227

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 33/175 (18%)

Query: 1   MWDDLATHEPAITCTCS-GCNCGVAAXXXXXXXXXXXHTFLMGLDDATYGPIRSNLLATD 59
           +W++L++H P   C C   C C  +              FL GL+D  +  +R+ +L  D
Sbjct: 4   LWEELSSHRPIPNCACVHPCRCASSKVAKIHRNEDQIMQFLTGLNDQ-FSVVRTQVLLVD 62

Query: 60  PLPSLNKVYSILIQEERVR-NITQGRDVRPEAMALAVQASAKVRGRDNSKA--------- 109
           PLPSLNKVYS+++QEE    +ITQ        ++++   S +V   DN K+         
Sbjct: 63  PLPSLNKVYSLVVQEESNNASITQ--------LSVSEDTSIQVNATDNRKSQGGVKSFSQ 114

Query: 110 -----VCTHCNRIGHEKAGCFLLAHNGSEGGSSASRTSKGHVRANIVHSAGSNLG 159
                 CT CN   H    C++       G  + ++ S    R N+V    S  G
Sbjct: 115 PKPTRFCTFCNCTNHTVDFCYM-----KHGYPNVNKPSP---RVNVVSQEDSETG 161


>Medtr4g048330.1 | hypothetical protein | LC |
           chr4:17127732-17129246 | 20130731
          Length = 422

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 16/138 (11%)

Query: 1   MWDDLATHEPAITCTCS-GCNCGVAAXXXXXXXXXXXHTFLMGLDDATYGPIRSNLLATD 59
           +W++L +H P   CTC   C C                 FL GL D  +  +++ +L  D
Sbjct: 86  LWEELNSHRPMHVCTCPYPCRCESMRAAREFRMEDQVIQFLTGLHD-NFSVVKTQVLLMD 144

Query: 60  PLPSLNKVYSILIQEERVRNITQGRDVRPEAMALAVQA--SAKVRGR----------DNS 107
           PLPS+NKVYS+++QEE   N T    +  E  ++ V A  + K+ GR           N+
Sbjct: 145 PLPSINKVYSMVVQEE--SNNTAPPPISIEDSSILVNALDARKLYGRGKSPSGYSQSKNT 202

Query: 108 KAVCTHCNRIGHEKAGCF 125
              CT C+R  H    C+
Sbjct: 203 SRYCTFCHRNNHTVDFCY 220


>Medtr4g461050.1 | hypothetical protein | LC |
           chr4:22466787-22464225 | 20130731
          Length = 397

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 24/143 (16%)

Query: 39  FLMGLDDATYGPIRSNLLATDPLPSLNKVYSILIQEERVRNITQGRDVRPEAMALAVQAS 98
           FL+GL++  +  ++S +L  DP+P +NK++S+ +Q ER  +    +D   +++ + V  S
Sbjct: 258 FLIGLNEY-FSMVKSQILLMDPIPPMNKIFSMALQHERQGHFALVKD---DSVFINVTDS 313

Query: 99  AKVRGRDNSKA------------VCTHCNRIGHEKAGCF--------LLAHNGSEGGSSA 138
            K +G ++ K             VCT C R  H    C+        L +   +E  +  
Sbjct: 314 RKFKGDNSGKFYPQGSNSKNVIRVCTFCGRNNHIVETCYEKLGVPPHLQSKRQNESATQV 373

Query: 139 SRTSKGHVRANIVHSAGSNLGDD 161
             TS GH    +V S    LGD+
Sbjct: 374 MYTSMGHFTIYLVPSNSETLGDE 396