Miyakogusa Predicted Gene

Lj1g3v0558030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0558030.1 Non Characterized Hit- tr|E1ZEZ5|E1ZEZ5_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,48.41,2e-19,seg,NULL; DUF1118,Protein of unknown function
DUF1118,CUFF.25962.1
         (173 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g026020.1 | plant/F13G24-250 protein | HC | chr3:7946923-7...   149   1e-36
Medtr4g089080.1 | transmembrane protein, putative | HC | chr4:35...    52   2e-07

>Medtr3g026020.1 | plant/F13G24-250 protein | HC |
           chr3:7946923-7948849 | 20130731
          Length = 189

 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/155 (59%), Positives = 103/155 (66%), Gaps = 16/155 (10%)

Query: 1   MEVSASTICRGSPFMCYAPATTKNSATFSPFLVKSMATPKPPPSVTKKNSGTAP------ 54
           M+ SAS IC  S  +  +P +T+NS TFSPFLVKSMATPKP    +KKNS   P      
Sbjct: 5   MKASAS-ICSNS-LIFSSPPSTQNSHTFSPFLVKSMATPKPVTVTSKKNSTVFPLGEKPR 62

Query: 55  --------IKLLTRMEQLKLLSKAEKAGLLSAAEKSGLSLSTIEKLGLLSKAEELGVLSA 106
                   +KLLTRMEQL+LL+KAEKAGLLSAAEK+GLSLSTIEKLGLLSKAEELGVLSA
Sbjct: 63  SAVTSTQSVKLLTRMEQLRLLTKAEKAGLLSAAEKAGLSLSTIEKLGLLSKAEELGVLSA 122

Query: 107 ATDXXXXXXXXXXXXXXXXXXXXFVYLVPEDNLGE 141
           ATD                    FVYLVPEDN+ E
Sbjct: 123 ATDPSTPGSLFTLSFVLLLLGPLFVYLVPEDNVVE 157


>Medtr4g089080.1 | transmembrane protein, putative | HC |
           chr4:35697229-35696271 | 20130731
          Length = 193

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 55  IKLLTRMEQLKLLSKAEKAGLLSAAEKSGLSLSTIEKLGLLSKA 98
           + +  ++E+ K+LS  EKAGLLS AE+ G++LS+IEKLGL SKA
Sbjct: 73  VDVFKKLEKRKVLSNVEKAGLLSKAEEFGVTLSSIEKLGLFSKA 116