Miyakogusa Predicted Gene
- Lj1g3v0524400.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0524400.1 tr|G7J8V5|G7J8V5_MEDTR 50S ribosomal protein L13
OS=Medicago truncatula GN=MTR_3g082760 PE=4
SV=1,75,0.00000001,rplM_bact: ribosomal protein L13,Ribosomal protein
L13, bacterial-type; RIBOSOMAL_L13,Ribosomal prot,CUFF.25940.1
(198 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g082760.1 | 50S ribosomal protein L13 | HC | chr3:37350483... 264 3e-71
Medtr8g054450.1 | 50S ribosomal protein L13 | HC | chr8:19793730... 86 2e-17
>Medtr3g082760.1 | 50S ribosomal protein L13 | HC |
chr3:37350483-37354635 | 20130731
Length = 200
Score = 264 bits (675), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 122/155 (78%), Positives = 133/155 (85%)
Query: 1 MKMLTSFNMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRD 60
MKM+ SFN+K+AAAG++RI LDGLRWRVFDAKGQ+LGRLASQIATVV GKDKPTY PNRD
Sbjct: 1 MKMVNSFNLKRAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRD 60
Query: 61 DGDMCIVLNAKDVCVTGRKFKDKVYYWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRML 120
DGDMCIVLNAKD+ VTGRK DKVYYWHTGYVG LKQRTLK+QMAKDPT+VIRKAILRM+
Sbjct: 61 DGDMCIVLNAKDIAVTGRKLTDKVYYWHTGYVGHLKQRTLKDQMAKDPTDVIRKAILRMI 120
Query: 121 PRNXXXXXXXXXXXIFPGSEHPFADRPLEQYEMPP 155
P+N IFPGSEHPF DRPLE Y MPP
Sbjct: 121 PKNNLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPP 155
>Medtr8g054450.1 | 50S ribosomal protein L13 | HC |
chr8:19793730-19798008 | 20130731
Length = 240
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 26 WRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIVLNAKDVCVTGRKFKDKVY 85
W + DA ++LGRLAS IA ++GK+ TY P+ D G IV+NA+ V V+G+K K+Y
Sbjct: 104 WYIVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGSFVIVINAEKVAVSGKKRTQKLY 163
Query: 86 YWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRMLPRNXXXXXXXXXXXIFPGSEHPF-A 144
H+G GG+ T + + P +I A+ MLP+ ++ G +HP A
Sbjct: 164 RRHSGRPGGMTVETFDQLQNRIPERIIEHAVRGMLPKGRLGRTLFTRLKVYSGPDHPHEA 223
Query: 145 DRPLE 149
+P++
Sbjct: 224 QQPID 228