Miyakogusa Predicted Gene

Lj1g3v0524400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0524400.1 tr|G7J8V5|G7J8V5_MEDTR 50S ribosomal protein L13
OS=Medicago truncatula GN=MTR_3g082760 PE=4
SV=1,75,0.00000001,rplM_bact: ribosomal protein L13,Ribosomal protein
L13, bacterial-type; RIBOSOMAL_L13,Ribosomal prot,CUFF.25940.1
         (198 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g082760.1 | 50S ribosomal protein L13 | HC | chr3:37350483...   264   3e-71
Medtr8g054450.1 | 50S ribosomal protein L13 | HC | chr8:19793730...    86   2e-17

>Medtr3g082760.1 | 50S ribosomal protein L13 | HC |
           chr3:37350483-37354635 | 20130731
          Length = 200

 Score =  264 bits (675), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 122/155 (78%), Positives = 133/155 (85%)

Query: 1   MKMLTSFNMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRD 60
           MKM+ SFN+K+AAAG++RI LDGLRWRVFDAKGQ+LGRLASQIATVV GKDKPTY PNRD
Sbjct: 1   MKMVNSFNLKRAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRD 60

Query: 61  DGDMCIVLNAKDVCVTGRKFKDKVYYWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRML 120
           DGDMCIVLNAKD+ VTGRK  DKVYYWHTGYVG LKQRTLK+QMAKDPT+VIRKAILRM+
Sbjct: 61  DGDMCIVLNAKDIAVTGRKLTDKVYYWHTGYVGHLKQRTLKDQMAKDPTDVIRKAILRMI 120

Query: 121 PRNXXXXXXXXXXXIFPGSEHPFADRPLEQYEMPP 155
           P+N           IFPGSEHPF DRPLE Y MPP
Sbjct: 121 PKNNLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPP 155


>Medtr8g054450.1 | 50S ribosomal protein L13 | HC |
           chr8:19793730-19798008 | 20130731
          Length = 240

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 26  WRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIVLNAKDVCVTGRKFKDKVY 85
           W + DA  ++LGRLAS IA  ++GK+  TY P+ D G   IV+NA+ V V+G+K   K+Y
Sbjct: 104 WYIVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGSFVIVINAEKVAVSGKKRTQKLY 163

Query: 86  YWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRMLPRNXXXXXXXXXXXIFPGSEHPF-A 144
             H+G  GG+   T  +   + P  +I  A+  MLP+            ++ G +HP  A
Sbjct: 164 RRHSGRPGGMTVETFDQLQNRIPERIIEHAVRGMLPKGRLGRTLFTRLKVYSGPDHPHEA 223

Query: 145 DRPLE 149
            +P++
Sbjct: 224 QQPID 228