Miyakogusa Predicted Gene

Lj1g3v0524360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0524360.1 Non Characterized Hit- tr|I3LBW5|I3LBW5_PIG
Uncharacterized protein OS=Sus scrofa GN=PIN4 PE=4
SV=1,44.52,4e-19,PPIC_PPIASE_2,Peptidyl-prolyl cis-trans isomerase,
PpiC-type; seg,NULL; FKBP-like,NULL; no descripti,CUFF.25939.1
         (145 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g037570.1 | peptidylprolyl cis/trans isomerase, NIMA-inter...   220   4e-58
Medtr8g076070.1 | peptidylprolyl cis/trans isomerase, NIMA-inter...    62   2e-10

>Medtr3g037570.1 | peptidylprolyl cis/trans isomerase,
           NIMA-interacting protein | HC | chr3:13807920-13804307 |
           20130731
          Length = 144

 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/124 (84%), Positives = 107/124 (86%)

Query: 22  SDENASXXXXXXXXXXXXXXTCTYVKARHILCEKQGKINEAYKKLQDGWLSNGDKVPPAE 81
           SDENAS              TCTYVKARHILCEKQGKINEAYKKLQDGWL NGDKVPPAE
Sbjct: 21  SDENASKGKGKGGKAADGLGTCTYVKARHILCEKQGKINEAYKKLQDGWLDNGDKVPPAE 80

Query: 82  FAKIAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFNTVVGATSAPFKSTHGYHIILSE 141
           FAK+AQEYSECPSGKKGGDLGWFPRGKMAGPFQ+VAFNT VG TSAPFKSTHGYHIILSE
Sbjct: 81  FAKVAQEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHIILSE 140

Query: 142 GRKN 145
           GRKN
Sbjct: 141 GRKN 144


>Medtr8g076070.1 | peptidylprolyl cis/trans isomerase,
           NIMA-interacting protein | HC | chr8:32186470-32188917 |
           20130731
          Length = 122

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 16/109 (14%)

Query: 46  VKARHILCEKQGKINEAYKKLQDGW-LSNGDK---------------VPPAEFAKIAQEY 89
           V+A HIL + +G   +A  K  +G+ + N  +                  A+F  +A  Y
Sbjct: 10  VRASHILIKHEGSRRKASWKDPEGYVIKNTTRESAVAILTSMKEDILTGKAKFEDLASRY 69

Query: 90  SECPSGKKGGDLGWFPRGKMAGPFQDVAFNTVVGATSAPFKSTHGYHII 138
           S+C S K+GGDLG F RG+M  PF+D  +   VG  S    S  G HII
Sbjct: 70  SDCSSAKRGGDLGSFGRGQMQKPFEDATYALQVGEISDIVDSDSGSHII 118