Miyakogusa Predicted Gene

Lj1g3v0477780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0477780.1 Non Characterized Hit- tr|C0PJV2|C0PJV2_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,57.3,3e-18,seg,NULL,CUFF.25898.1
         (320 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0036s0320.1 | hypothetical protein | HC | scaffold0036:1159...   304   8e-83
Medtr0036s0320.2 | hypothetical protein | HC | scaffold0036:1179...   267   8e-72
Medtr0036s0320.3 | hypothetical protein | HC | scaffold0036:1179...   262   4e-70
Medtr0036s0320.4 | hypothetical protein | HC | scaffold0036:1179...   198   7e-51
Medtr0036s0320.5 | hypothetical protein | HC | scaffold0036:1178...   198   7e-51
Medtr3g040450.2 | hypothetical protein | HC | chr3:14226828-1422...   172   3e-43
Medtr3g040450.1 | hypothetical protein | HC | chr3:14227601-1422...   116   4e-26

>Medtr0036s0320.1 | hypothetical protein | HC |
           scaffold0036:115972-112835 | 20130731
          Length = 191

 Score =  304 bits (778), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 161/191 (84%), Gaps = 2/191 (1%)

Query: 132 EAVKSIFSPHFEKAIWFQNSTMYHFSMFHASHHIVPVPXXXXXXXXXXXXXXXXXXMLCP 191
           EAVK+IF+P+F+KAIWFQNS+MYHFSMFHASHHIVPV                    LCP
Sbjct: 1   EAVKNIFAPYFDKAIWFQNSSMYHFSMFHASHHIVPVSATKVEVEAEASSVETVASKLCP 60

Query: 192 LKIVLDRVVLTSTGVLLGCWQVISGTDPITIRAKLKNVLPRAPEKQLYDASILHTTFARL 251
           LKIVLDRVVLTSTGVLLGCWQVISG+DPITIR++LKN LPRAPEKQLYDA+ILHTTFARL
Sbjct: 61  LKIVLDRVVLTSTGVLLGCWQVISGSDPITIRSRLKNALPRAPEKQLYDAAILHTTFARL 120

Query: 252 LGPSSTK--ERLETSDDVQFFHELVNRLNNQIHGFKAVVSELWYVEEYDVLALALNGRMN 309
           LGP  T   E L+TS+++QFFHELVN+LN+Q  GF+AVVSELWYVEEY+VLALALNGRM 
Sbjct: 121 LGPPRTSFTELLKTSNELQFFHELVNQLNSQFQGFEAVVSELWYVEEYNVLALALNGRMT 180

Query: 310 VRKFKLGCSRD 320
           +RKFKLGCSRD
Sbjct: 181 IRKFKLGCSRD 191


>Medtr0036s0320.2 | hypothetical protein | HC |
           scaffold0036:117951-112544 | 20130731
          Length = 170

 Score =  267 bits (683), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 127/170 (74%), Positives = 140/170 (82%), Gaps = 2/170 (1%)

Query: 153 MYHFSMFHASHHIVPVPXXXXXXXXXXXXXXXXXXMLCPLKIVLDRVVLTSTGVLLGCWQ 212
           MYHFSMFHASHHIVPV                    LCPLKIVLDRVVLTSTGVLLGCWQ
Sbjct: 1   MYHFSMFHASHHIVPVSATKVEVEAEASSVETVASKLCPLKIVLDRVVLTSTGVLLGCWQ 60

Query: 213 VISGTDPITIRAKLKNVLPRAPEKQLYDASILHTTFARLLGPSSTK--ERLETSDDVQFF 270
           VISG+DPITIR++LKN LPRAPEKQLYDA+ILHTTFARLLGP  T   E L+TS+++QFF
Sbjct: 61  VISGSDPITIRSRLKNALPRAPEKQLYDAAILHTTFARLLGPPRTSFTELLKTSNELQFF 120

Query: 271 HELVNRLNNQIHGFKAVVSELWYVEEYDVLALALNGRMNVRKFKLGCSRD 320
           HELVN+LN+Q  GF+AVVSELWYVEEY+VLALALNGRM +RKFKLGCSRD
Sbjct: 121 HELVNQLNSQFQGFEAVVSELWYVEEYNVLALALNGRMTIRKFKLGCSRD 170


>Medtr0036s0320.3 | hypothetical protein | HC |
           scaffold0036:117951-112531 | 20130731
          Length = 163

 Score =  262 bits (669), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 127/170 (74%), Positives = 140/170 (82%), Gaps = 9/170 (5%)

Query: 153 MYHFSMFHASHHIVPVPXXXXXXXXXXXXXXXXXXMLCPLKIVLDRVVLTSTGVLLGCWQ 212
           MYHFSMFHASHHIVPV                    LCPLKIVLDRVVLTSTGVLLGCWQ
Sbjct: 1   MYHFSMFHASHHIVPVEAEASSVETVASK-------LCPLKIVLDRVVLTSTGVLLGCWQ 53

Query: 213 VISGTDPITIRAKLKNVLPRAPEKQLYDASILHTTFARLLGPSSTK--ERLETSDDVQFF 270
           VISG+DPITIR++LKN LPRAPEKQLYDA+ILHTTFARLLGP  T   E L+TS+++QFF
Sbjct: 54  VISGSDPITIRSRLKNALPRAPEKQLYDAAILHTTFARLLGPPRTSFTELLKTSNELQFF 113

Query: 271 HELVNRLNNQIHGFKAVVSELWYVEEYDVLALALNGRMNVRKFKLGCSRD 320
           HELVN+LN+Q  GF+AVVSELWYVEEY+VLALALNGRM +RKFKLGCSRD
Sbjct: 114 HELVNQLNSQFQGFEAVVSELWYVEEYNVLALALNGRMTIRKFKLGCSRD 163


>Medtr0036s0320.4 | hypothetical protein | HC |
           scaffold0036:117901-112531 | 20130731
          Length = 177

 Score =  198 bits (503), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 95/135 (70%), Positives = 106/135 (78%), Gaps = 2/135 (1%)

Query: 153 MYHFSMFHASHHIVPVPXXXXXXXXXXXXXXXXXXMLCPLKIVLDRVVLTSTGVLLGCWQ 212
           MYHFSMFHASHHIVPV                    LCPLKIVLDRVVLTSTGVLLGCWQ
Sbjct: 1   MYHFSMFHASHHIVPVSATKVEVEAEASSVETVASKLCPLKIVLDRVVLTSTGVLLGCWQ 60

Query: 213 VISGTDPITIRAKLKNVLPRAPEKQLYDASILHTTFARLLGPSSTK--ERLETSDDVQFF 270
           VISG+DPITIR++LKN LPRAPEKQLYDA+ILHTTFARLLGP  T   E L+TS+++QFF
Sbjct: 61  VISGSDPITIRSRLKNALPRAPEKQLYDAAILHTTFARLLGPPRTSFTELLKTSNELQFF 120

Query: 271 HELVNRLNNQIHGFK 285
           HELVN+LN+Q  GF+
Sbjct: 121 HELVNQLNSQFQGFE 135


>Medtr0036s0320.5 | hypothetical protein | HC |
           scaffold0036:117869-113581 | 20130731
          Length = 177

 Score =  198 bits (503), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 95/135 (70%), Positives = 106/135 (78%), Gaps = 2/135 (1%)

Query: 153 MYHFSMFHASHHIVPVPXXXXXXXXXXXXXXXXXXMLCPLKIVLDRVVLTSTGVLLGCWQ 212
           MYHFSMFHASHHIVPV                    LCPLKIVLDRVVLTSTGVLLGCWQ
Sbjct: 1   MYHFSMFHASHHIVPVSATKVEVEAEASSVETVASKLCPLKIVLDRVVLTSTGVLLGCWQ 60

Query: 213 VISGTDPITIRAKLKNVLPRAPEKQLYDASILHTTFARLLGPSSTK--ERLETSDDVQFF 270
           VISG+DPITIR++LKN LPRAPEKQLYDA+ILHTTFARLLGP  T   E L+TS+++QFF
Sbjct: 61  VISGSDPITIRSRLKNALPRAPEKQLYDAAILHTTFARLLGPPRTSFTELLKTSNELQFF 120

Query: 271 HELVNRLNNQIHGFK 285
           HELVN+LN+Q  GF+
Sbjct: 121 HELVNQLNSQFQGFE 135


>Medtr3g040450.2 | hypothetical protein | HC |
           chr3:14226828-14229137 | 20130731
          Length = 148

 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/129 (66%), Positives = 95/129 (73%)

Query: 6   MTGRTVNLTWWSHSKTVALIWLISAFFFYTLFQMAXXXXXXXXXXXXXXXXXXXTEQRSK 65
           MTGRT      SHSK VALIWLISA  F+ LFQMA                   TE+RSK
Sbjct: 1   MTGRTGTFICSSHSKKVALIWLISALCFFILFQMALRNSSNTLPSPSSDSLNLNTERRSK 60

Query: 66  LYDKMARDLDEHGAAFMKHGETSQSLTISDIFTVKDGYVTPVLKAANPPVRANILYLSTE 125
           LYDKMARDLDEHGAAF+KHGETSQSL+ISDIFT+KDG VTPVLK A+PP+RAN+LYLSTE
Sbjct: 61  LYDKMARDLDEHGAAFLKHGETSQSLSISDIFTLKDGSVTPVLKPASPPIRANVLYLSTE 120

Query: 126 FSVPIAEAV 134
           FS PIA  +
Sbjct: 121 FSFPIASYI 129


>Medtr3g040450.1 | hypothetical protein | HC |
           chr3:14227601-14227916 | 20130731
          Length = 62

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 59/62 (95%)

Query: 70  MARDLDEHGAAFMKHGETSQSLTISDIFTVKDGYVTPVLKAANPPVRANILYLSTEFSVP 129
           MARDLDEHGAAF+KHGETSQSL+ISDIFT+KDG VTPVLK A+PP+RAN+LYLSTEFS P
Sbjct: 1   MARDLDEHGAAFLKHGETSQSLSISDIFTLKDGSVTPVLKPASPPIRANVLYLSTEFSFP 60

Query: 130 IA 131
           IA
Sbjct: 61  IA 62