Miyakogusa Predicted Gene

Lj1g3v0449050.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0449050.1 Non Characterized Hit- tr|I1IG18|I1IG18_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,66.67,0.0000000001,seg,NULL,CUFF.25875.1
         (245 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g045420.1 | PPR containing plant-like protein | HC | chr3:...   257   9e-69

>Medtr3g045420.1 | PPR containing plant-like protein | HC |
           chr3:14773131-14777409 | 20130731
          Length = 903

 Score =  257 bits (656), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 143/269 (53%), Positives = 177/269 (65%), Gaps = 31/269 (11%)

Query: 1   MQNMLRGKQISSLSSTARSFFLSGSRCNGAEGNSCTCPEDETCVS-RRQRRKNEDLLVQK 59
           MQNMLR K IS+ SS+ARSFFL G+RCN  + NSCTC EDETC S R+QR++++DLL QK
Sbjct: 1   MQNMLRSKPISTFSSSARSFFLGGTRCNAPDANSCTCNEDETCASIRQQRKRDQDLLAQK 60

Query: 60  PSSLVSKT------------------------TSQVKGTLVSGNSASSANAPCIRKAESV 95
           P+S+V+KT                        TS+V+G  VS   AS  ++    K ESV
Sbjct: 61  PTSIVAKTLAQKPNSIVASTLAQKPTSIVANATSRVEGASVSETPASGTSS---HKVESV 117

Query: 96  DQSSALVQVRSTLGPSSKSDTVTYACVVDGVQNHAVHSSPLDSEQFYRAGIAAVNFLSDF 155
           D+S ++ QVRST  PSSKS++V YACV D  QNH   SSPLD EQ YRAGIAAVNF+SD 
Sbjct: 118 DKSGSVQQVRSTSLPSSKSNSVAYACVADDSQNHVTESSPLDGEQIYRAGIAAVNFISDL 177

Query: 156 VNNKFPSSDGMGILSHSKNYVVDAARALPNIRPASVKQIRKEDFTSVXXXXXXXXXXXXX 215
           VN+K P SDGMGILS+SKN +V+    + NIR ++VK+IRKEDF SV             
Sbjct: 178 VNSKLPLSDGMGILSYSKNCMVE---PIANIRSSNVKKIRKEDFISVHPRPPVSTERGPS 234

Query: 216 XAASSYHGAKGKVDKPNLGKSFKHVASSG 244
              SSYHG+KG+ DK  +GK F+H ASSG
Sbjct: 235 NNTSSYHGSKGRGDKSKIGKGFQHAASSG 263