Miyakogusa Predicted Gene

Lj1g3v0437870.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0437870.1 Non Characterized Hit- tr|I1LIT7|I1LIT7_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,90,0,TRANSCRIPTION
INITIATION FACTOR IIIC (TFIIIC), POLYPEPTIDE 3-RELATED,NULL;
TPR-like,NULL; no descrip,CUFF.25879.1
         (320 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g079390.1 | general transcription factor 3C-like protein |...   548   e-156
Medtr4g074860.1 | general transcription factor 3C-like protein |...   517   e-147
Medtr4g074860.4 | general transcription factor 3C-like protein |...   374   e-104
Medtr4g074860.2 | general transcription factor 3C-like protein |...   187   1e-47
Medtr4g074860.3 | general transcription factor 3C-like protein |...   187   1e-47

>Medtr4g079390.1 | general transcription factor 3C-like protein | HC
           | chr4:30684330-30698647 | 20130731
          Length = 937

 Score =  548 bits (1411), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 259/320 (80%), Positives = 289/320 (90%)

Query: 1   MEKEKRKAEALASGVDWLSDDSDDEPQKENKEPPRYNLLKVEEHHQLIIDLCKALSSLRR 60
           +EKE++KAEA+ASG+DWLSDDSDDEPQ+ N + P  NL K E +HQLIIDLC AL+SL+R
Sbjct: 618 IEKERKKAEAVASGIDWLSDDSDDEPQEPNTDSPLCNLHKDEGYHQLIIDLCNALASLQR 677

Query: 61  YGEALEIINLTLRLAHTSLSAEKKEELRSLGAQMAYNNTDPKHGFDCVKYIVQQYPHSVA 120
           Y EALEIINLTLRLAHTSLS EK E+LRSL  QMAYN TDPK GFDCVK +VQQ+ HSVA
Sbjct: 678 YSEALEIINLTLRLAHTSLSTEKNEKLRSLEVQMAYNTTDPKQGFDCVKDMVQQHAHSVA 737

Query: 121 AWNCYYKVISRLENRDTRHYKFIRGMQGKFADCVPPILISGHQFTIFSHHQDAARKYLEA 180
           AWNCYYKV+SRLENRDTRH KF+R MQGKF DCVPPILIS HQFT+ SHHQDAARKYLEA
Sbjct: 738 AWNCYYKVVSRLENRDTRHDKFLRSMQGKFVDCVPPILISAHQFTLCSHHQDAARKYLEA 797

Query: 181 YKLLPENPLVNLCVGTALINLALGLRLQNKHQCVLQGLAFLYNNLRICENSQESLYNIAR 240
           YKLLPENPLVNLCVGTAL+NLALG RL NKHQC++QGLAFLYNNL IC NSQESLYNIAR
Sbjct: 798 YKLLPENPLVNLCVGTALVNLALGFRLHNKHQCIVQGLAFLYNNLEICTNSQESLYNIAR 857

Query: 241 AFHHVGLVTLAALYYEKVIAICEKDYPIPKLPNEAPDVMENRKPGYCDLRREAAFNLHLI 300
           A+HHVGLVTLAA+YYEKVIAI E+DYPIPKL NE+ DV+EN KPGYC+LRREAA+NLHLI
Sbjct: 858 AYHHVGLVTLAAIYYEKVIAIRERDYPIPKLQNESIDVIENHKPGYCNLRREAAYNLHLI 917

Query: 301 YKKSGALDLARQVLKDHCTL 320
           YK+SGALDLARQVLKD+C++
Sbjct: 918 YKRSGALDLARQVLKDYCSV 937


>Medtr4g074860.1 | general transcription factor 3C-like protein | HC
           | chr4:28485039-28503815 | 20130731
          Length = 956

 Score =  517 bits (1332), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/332 (77%), Positives = 281/332 (84%), Gaps = 12/332 (3%)

Query: 1   MEKEKRKAEALASGVDWLSDDSDDEPQKENKEPPRYNLLKVEEHHQLIIDLCKALSSLRR 60
           +EKEKRKAEA ASG+DW SDDSDDE QK N E P  NL K E +HQL+IDLC AL+SL+ 
Sbjct: 625 IEKEKRKAEAAASGIDWRSDDSDDELQKPNTESPLCNLHKDEGYHQLLIDLCNALASLQM 684

Query: 61  YGEALEIINLTLRLAHTSLSAEKKEELRSLGAQMAYNNTDPKHGFDCVKYIVQQYPHSVA 120
           Y EALEIINL+L+LAH SLSAEK E+LRSLG QMAY+  DPK GFDCVK IV+Q+  SVA
Sbjct: 685 YREALEIINLSLKLAHISLSAEKNEKLRSLGVQMAYSTPDPKQGFDCVKGIVKQHAQSVA 744

Query: 121 AWNCYYKVISRLENRDTRHYKFIRGMQGKFADCVPPILISGHQFTIFSHHQDAARKYLEA 180
           AWNCYYKVISRLENRDTRH KF+R MQ K+ D VPPILIS HQFT+ SHHQDAARKYLEA
Sbjct: 745 AWNCYYKVISRLENRDTRHDKFLRDMQEKYVDSVPPILISAHQFTLCSHHQDAARKYLEA 804

Query: 181 YKLLPENPLVNLCVGTALINLALGLRLQNKHQCVLQGLAFLYNNLRICENS--------- 231
           YKLLP+NPLVNLCVGTALINLALG RLQNKHQCV+QGLAFLYNNL IC+NS         
Sbjct: 805 YKLLPKNPLVNLCVGTALINLALGFRLQNKHQCVVQGLAFLYNNLEICKNSQESTELIDC 864

Query: 232 ---QESLYNIARAFHHVGLVTLAALYYEKVIAICEKDYPIPKLPNEAPDVMENRKPGYCD 288
              QESLYNIARA+HHVGLVTLAA+YYEKVIAI E+DYPIPK  NE  DV EN KPGYCD
Sbjct: 865 PALQESLYNIARAYHHVGLVTLAAIYYEKVIAIKERDYPIPKFENENIDVNENHKPGYCD 924

Query: 289 LRREAAFNLHLIYKKSGALDLARQVLKDHCTL 320
           LRREAA+NLHLIYKKSGALDLARQVLKD+C++
Sbjct: 925 LRREAAYNLHLIYKKSGALDLARQVLKDYCSV 956


>Medtr4g074860.4 | general transcription factor 3C-like protein | HC
           | chr4:28485039-28503815 | 20130731
          Length = 877

 Score =  374 bits (960), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/232 (78%), Positives = 200/232 (86%)

Query: 1   MEKEKRKAEALASGVDWLSDDSDDEPQKENKEPPRYNLLKVEEHHQLIIDLCKALSSLRR 60
           +EKEKRKAEA ASG+DW SDDSDDE QK N E P  NL K E +HQL+IDLC AL+SL+ 
Sbjct: 625 IEKEKRKAEAAASGIDWRSDDSDDELQKPNTESPLCNLHKDEGYHQLLIDLCNALASLQM 684

Query: 61  YGEALEIINLTLRLAHTSLSAEKKEELRSLGAQMAYNNTDPKHGFDCVKYIVQQYPHSVA 120
           Y EALEIINL+L+LAH SLSAEK E+LRSLG QMAY+  DPK GFDCVK IV+Q+  SVA
Sbjct: 685 YREALEIINLSLKLAHISLSAEKNEKLRSLGVQMAYSTPDPKQGFDCVKGIVKQHAQSVA 744

Query: 121 AWNCYYKVISRLENRDTRHYKFIRGMQGKFADCVPPILISGHQFTIFSHHQDAARKYLEA 180
           AWNCYYKVISRLENRDTRH KF+R MQ K+ D VPPILIS HQFT+ SHHQDAARKYLEA
Sbjct: 745 AWNCYYKVISRLENRDTRHDKFLRDMQEKYVDSVPPILISAHQFTLCSHHQDAARKYLEA 804

Query: 181 YKLLPENPLVNLCVGTALINLALGLRLQNKHQCVLQGLAFLYNNLRICENSQ 232
           YKLLP+NPLVNLCVGTALINLALG RLQNKHQCV+QGLAFLYNNL IC+NSQ
Sbjct: 805 YKLLPKNPLVNLCVGTALINLALGFRLQNKHQCVVQGLAFLYNNLEICKNSQ 856


>Medtr4g074860.2 | general transcription factor 3C-like protein | HC
           | chr4:28485039-28503815 | 20130731
          Length = 759

 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/128 (71%), Positives = 105/128 (82%)

Query: 1   MEKEKRKAEALASGVDWLSDDSDDEPQKENKEPPRYNLLKVEEHHQLIIDLCKALSSLRR 60
           +EKEKRKAEA ASG+DW SDDSDDE QK N E P  NL K E +HQL+IDLC AL+SL+ 
Sbjct: 625 IEKEKRKAEAAASGIDWRSDDSDDELQKPNTESPLCNLHKDEGYHQLLIDLCNALASLQM 684

Query: 61  YGEALEIINLTLRLAHTSLSAEKKEELRSLGAQMAYNNTDPKHGFDCVKYIVQQYPHSVA 120
           Y EALEIINL+L+LAH SLSAEK E+LRSLG QMAY+  DPK GFDCVK IV+Q+  SVA
Sbjct: 685 YREALEIINLSLKLAHISLSAEKNEKLRSLGVQMAYSTPDPKQGFDCVKGIVKQHAQSVA 744

Query: 121 AWNCYYKV 128
           AWNCYYK+
Sbjct: 745 AWNCYYKI 752


>Medtr4g074860.3 | general transcription factor 3C-like protein | HC
           | chr4:28485039-28503815 | 20130731
          Length = 759

 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/128 (71%), Positives = 105/128 (82%)

Query: 1   MEKEKRKAEALASGVDWLSDDSDDEPQKENKEPPRYNLLKVEEHHQLIIDLCKALSSLRR 60
           +EKEKRKAEA ASG+DW SDDSDDE QK N E P  NL K E +HQL+IDLC AL+SL+ 
Sbjct: 625 IEKEKRKAEAAASGIDWRSDDSDDELQKPNTESPLCNLHKDEGYHQLLIDLCNALASLQM 684

Query: 61  YGEALEIINLTLRLAHTSLSAEKKEELRSLGAQMAYNNTDPKHGFDCVKYIVQQYPHSVA 120
           Y EALEIINL+L+LAH SLSAEK E+LRSLG QMAY+  DPK GFDCVK IV+Q+  SVA
Sbjct: 685 YREALEIINLSLKLAHISLSAEKNEKLRSLGVQMAYSTPDPKQGFDCVKGIVKQHAQSVA 744

Query: 121 AWNCYYKV 128
           AWNCYYK+
Sbjct: 745 AWNCYYKI 752