Miyakogusa Predicted Gene

Lj1g3v0415990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0415990.1 tr|Q952Q7|Q952Q7_SOLLC Succinate dehydrogenase
subunit 4 (Fragment) OS=Solanum lycopersicum GN=sdh4
,45.68,0.000000000006,seg,NULL; no description,NULL,CUFF.25866.1
         (80 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g078610.2 | succinate dehydrogenase subunit 4 | HC | chr3:...    93   4e-20
Medtr3g078610.1 | succinate dehydrogenase subunit 4 | HC | chr3:...    93   4e-20

>Medtr3g078610.2 | succinate dehydrogenase subunit 4 | HC |
           chr3:35415954-35421765 | 20130731
          Length = 224

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 53/79 (67%)

Query: 2   SKREQXXXXXXXXXXXXXXXXXXXXXVANCFVFWHTHAGIEEILADYVHHEVTREFVSIS 61
           +KREQ                      AN F+FWH +AGIEEILADYVHHE+TREFV IS
Sbjct: 146 TKREQLLKVTAAVPLLLIYPNAYSLLAANFFIFWHINAGIEEILADYVHHEMTREFVLIS 205

Query: 62  LRLFLIIAMKDVFLNLIFV 80
           LRLFLIIA+KDVFLN +FV
Sbjct: 206 LRLFLIIAIKDVFLNFVFV 224


>Medtr3g078610.1 | succinate dehydrogenase subunit 4 | HC |
           chr3:35416072-35421682 | 20130731
          Length = 225

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 53/79 (67%)

Query: 2   SKREQXXXXXXXXXXXXXXXXXXXXXVANCFVFWHTHAGIEEILADYVHHEVTREFVSIS 61
           +KREQ                      AN F+FWH +AGIEEILADYVHHE+TREFV IS
Sbjct: 147 TKREQLLKVTAAVPLLLIYPNAYSLLAANFFIFWHINAGIEEILADYVHHEMTREFVLIS 206

Query: 62  LRLFLIIAMKDVFLNLIFV 80
           LRLFLIIA+KDVFLN +FV
Sbjct: 207 LRLFLIIAIKDVFLNFVFV 225