Miyakogusa Predicted Gene

Lj1g3v0415900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0415900.1 tr|A9SXC9|A9SXC9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_231478,42,0.00008,E2F_TDP,Transcription factor
E2F/dimerisation partner (TDP); "Winged helix" DNA-binding
domain,NULL;,CUFF.25793.1
         (372 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g106540.3 | E2F transcription factor-E2FE-like protein | H...   464   e-131
Medtr4g106540.4 | E2F transcription factor-E2FE-like protein | H...   419   e-117
Medtr4g106540.1 | E2F transcription factor-E2FE-like protein | H...   419   e-117
Medtr4g106540.2 | E2F transcription factor-E2FE-like protein | H...   410   e-114
Medtr4g106540.6 | E2F transcription factor-E2FE-like protein | H...   390   e-108
Medtr4g106540.5 | E2F transcription factor-E2FE-like protein | H...   381   e-106
Medtr3g113800.1 | E2F transcription factor | HC | chr3:53087588-...    65   1e-10
Medtr4g052000.1 | E2F transcription factor | HC | chr4:18814210-...    65   1e-10
Medtr3g113800.2 | E2F transcription factor | HC | chr3:53087590-...    65   1e-10
Medtr1g105110.1 | E2F transcription factor | HC | chr1:25000070-...    62   1e-09

>Medtr4g106540.3 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194429-44190467 | 20130731
          Length = 385

 Score =  464 bits (1195), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/383 (64%), Positives = 296/383 (77%), Gaps = 33/383 (8%)

Query: 9   RHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGML 68
           RHHTY+RKQKSLGLLCTNFLSLYNK+ + LIGLDDA ++LGVERRRIYDIVNVLES+G+L
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 69  ARKAKNQYTWKGFAVIPEALRELKDEGLKENL---FDAANDSAKVSDDEYDEE------- 118
           ARKAKNQYTWKGFA IP AL+ELK+EGL +NL    + AN+  KVSD+E ++E       
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 119 -----ANPATGSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLD 173
                 +  TGSQND  N +SA   +S +N+ R+EKSL LLTQNFVKLFVCSN++M+SLD
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSA-FPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLD 188

Query: 174 DAAKLLLGNV-DTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRS 232
           DAA+LLLG+  +++ MRTKVRRLYDIANVL+S+NLIEKTH  ++RKPAFRWLGLKGKT +
Sbjct: 189 DAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLN 248

Query: 233 ESGNSAQDPNTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQ 292
           E+  S  +   NESRKR FG+D+TNISF RN++DLFM  GDF K   MEN  D+  CQ  
Sbjct: 249 EA--SLYNSKQNESRKRAFGNDVTNISFARNRMDLFMG-GDFKKQKTMEN--DSGLCQ-- 301

Query: 293 SEKSNSKQDAKQTTGC-YQFGPFAP---RKVGASENDNVKQVHDWESLAKAHRPQYENLA 348
               + KQ  KQT+   YQFGPFAP    K G+SEN  VKQVHDWESLA  H PQY+N A
Sbjct: 302 ---EDVKQGIKQTSAANYQFGPFAPAFVSKAGSSEN-KVKQVHDWESLATEHCPQYQNQA 357

Query: 349 LRDLFSHYTEAWKSWYSEVAGKR 371
           L++L+SHY EAWKSWYSEVAGKR
Sbjct: 358 LKELYSHYMEAWKSWYSEVAGKR 380


>Medtr4g106540.4 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194343-44190467 | 20130731
          Length = 358

 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/358 (63%), Positives = 273/358 (76%), Gaps = 33/358 (9%)

Query: 9   RHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGML 68
           RHHTY+RKQKSLGLLCTNFLSLYNK+ + LIGLDDA ++LGVERRRIYDIVNVLES+G+L
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 69  ARKAKNQYTWKGFAVIPEALRELKDEGLKENL---FDAANDSAKVSDDEYDEE------- 118
           ARKAKNQYTWKGFA IP AL+ELK+EGL +NL    + AN+  KVSD+E ++E       
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 119 -----ANPATGSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLD 173
                 +  TGSQND  N +SA   +S +N+ R+EKSL LLTQNFVKLFVCSN++M+SLD
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSA-FPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLD 188

Query: 174 DAAKLLLGNV-DTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRS 232
           DAA+LLLG+  +++ MRTKVRRLYDIANVL+S+NLIEKTH  ++RKPAFRWLGLKGKT +
Sbjct: 189 DAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLN 248

Query: 233 ESGNSAQDPNTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQ 292
           E+  S  +   NESRKR FG+D+TNISF RN++DLFM  GDF K   MEN  D+  CQ  
Sbjct: 249 EA--SLYNSKQNESRKRAFGNDVTNISFARNRMDLFMG-GDFKKQKTMEN--DSGLCQ-- 301

Query: 293 SEKSNSKQDAKQTTGC-YQFGPFAP---RKVGASENDNVKQVHDWESLAKAHRPQYEN 346
               + KQ  KQT+   YQFGPFAP    K G+SEN  VKQVHDWESLA  H PQY+N
Sbjct: 302 ---EDVKQGIKQTSAANYQFGPFAPAFVSKAGSSEN-KVKQVHDWESLATEHCPQYQN 355


>Medtr4g106540.1 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194355-44190467 | 20130731
          Length = 358

 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/358 (63%), Positives = 273/358 (76%), Gaps = 33/358 (9%)

Query: 9   RHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGML 68
           RHHTY+RKQKSLGLLCTNFLSLYNK+ + LIGLDDA ++LGVERRRIYDIVNVLES+G+L
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 69  ARKAKNQYTWKGFAVIPEALRELKDEGLKENL---FDAANDSAKVSDDEYDEE------- 118
           ARKAKNQYTWKGFA IP AL+ELK+EGL +NL    + AN+  KVSD+E ++E       
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 119 -----ANPATGSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLD 173
                 +  TGSQND  N +SA   +S +N+ R+EKSL LLTQNFVKLFVCSN++M+SLD
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSA-FPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLD 188

Query: 174 DAAKLLLGNV-DTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRS 232
           DAA+LLLG+  +++ MRTKVRRLYDIANVL+S+NLIEKTH  ++RKPAFRWLGLKGKT +
Sbjct: 189 DAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLN 248

Query: 233 ESGNSAQDPNTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQ 292
           E+  S  +   NESRKR FG+D+TNISF RN++DLFM  GDF K   MEN  D+  CQ  
Sbjct: 249 EA--SLYNSKQNESRKRAFGNDVTNISFARNRMDLFMG-GDFKKQKTMEN--DSGLCQ-- 301

Query: 293 SEKSNSKQDAKQTTGC-YQFGPFAP---RKVGASENDNVKQVHDWESLAKAHRPQYEN 346
               + KQ  KQT+   YQFGPFAP    K G+SEN  VKQVHDWESLA  H PQY+N
Sbjct: 302 ---EDVKQGIKQTSAANYQFGPFAPAFVSKAGSSEN-KVKQVHDWESLATEHCPQYQN 355


>Medtr4g106540.2 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194065-44191173 | 20130731
          Length = 364

 Score =  410 bits (1054), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/364 (62%), Positives = 272/364 (74%), Gaps = 39/364 (10%)

Query: 9   RHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGML 68
           RHHTY+RKQKSLGLLCTNFLSLYNK+ + LIGLDDA ++LGVERRRIYDIVNVLES+G+L
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 69  ARKAKNQYTWKGFAVIPEALRELKDEGLKENL---FDAANDSAKVSDDEYDEE------- 118
           ARKAKNQYTWKGFA IP AL+ELK+EGL +NL    + AN+  KVSD+E ++E       
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 119 -----ANPATGSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLD 173
                 +  TGSQND  N +SA   +S +N+ R+EKSL LLTQNFVKLFVCSN++M+SLD
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSA-FPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLD 188

Query: 174 DAAKLLLGNV-DTAMMR------TKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGL 226
           DAA+LLLG+  +++ MR       KVRRLYDIANVL+S+NLIEKTH  ++RKPAFRWLGL
Sbjct: 189 DAARLLLGDAYNSSTMRIPSGLAAKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGL 248

Query: 227 KGKTRSESGNSAQDPNTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDN 286
           KGKT +E+  S  +   NESRKR FG+D+TNISF RN++DLFM  GDF K   MEN  D+
Sbjct: 249 KGKTLNEA--SLYNSKQNESRKRAFGNDVTNISFARNRMDLFMG-GDFKKQKTMEN--DS 303

Query: 287 LNCQGQSEKSNSKQDAKQTTGC-YQFGPFAP---RKVGASENDNVKQVHDWESLAKAHRP 342
             CQ      + KQ  KQT+   YQFGPFAP    K G+SEN  VKQVHDWESLA  H P
Sbjct: 304 GLCQ-----EDVKQGIKQTSAANYQFGPFAPAFVSKAGSSEN-KVKQVHDWESLATEHCP 357

Query: 343 QYEN 346
           QY+N
Sbjct: 358 QYQN 361


>Medtr4g106540.6 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194316-44190574 | 20130731
          Length = 339

 Score =  390 bits (1001), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/342 (62%), Positives = 260/342 (76%), Gaps = 33/342 (9%)

Query: 9   RHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGML 68
           RHHTY+RKQKSLGLLCTNFLSLYNK+ + LIGLDDA ++LGVERRRIYDIVNVLES+G+L
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 69  ARKAKNQYTWKGFAVIPEALRELKDEGLKENL---FDAANDSAKVSDDEYDEE------- 118
           ARKAKNQYTWKGFA IP AL+ELK+EGL +NL    + AN+  KVSD+E ++E       
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 119 -----ANPATGSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLD 173
                 +  TGSQND  N +SA   +S +N+ R+EKSL LLTQNFVKLFVCSN++M+SLD
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSA-FPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLD 188

Query: 174 DAAKLLLGNV-DTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRS 232
           DAA+LLLG+  +++ MRTKVRRLYDIANVL+S+NLIEKTH  ++RKPAFRWLGLKGKT +
Sbjct: 189 DAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLN 248

Query: 233 ESGNSAQDPNTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQ 292
           E+  S  +   NESRKR FG+D+TNISF RN++DLFM  GDF K   MEN  D+  CQ  
Sbjct: 249 EA--SLYNSKQNESRKRAFGNDVTNISFARNRMDLFMG-GDFKKQKTMEN--DSGLCQ-- 301

Query: 293 SEKSNSKQDAKQTTGC-YQFGPFAP---RKVGASENDNVKQV 330
               + KQ  KQT+   YQFGPFAP    K G+SEN  VKQ+
Sbjct: 302 ---EDVKQGIKQTSAANYQFGPFAPAFVSKAGSSEN-KVKQL 339


>Medtr4g106540.5 | E2F transcription factor-E2FE-like protein | HC |
           chr4:44194316-44190574 | 20130731
          Length = 345

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/348 (61%), Positives = 259/348 (74%), Gaps = 39/348 (11%)

Query: 9   RHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGML 68
           RHHTY+RKQKSLGLLCTNFLSLYNK+ + LIGLDDA ++LGVERRRIYDIVNVLES+G+L
Sbjct: 11  RHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVL 70

Query: 69  ARKAKNQYTWKGFAVIPEALRELKDEGLKENL---FDAANDSAKVSDDEYDEE------- 118
           ARKAKNQYTWKGFA IP AL+ELK+EGL +NL    + AN+  KVSD+E ++E       
Sbjct: 71  ARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTG 130

Query: 119 -----ANPATGSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLD 173
                 +  TGSQND  N +SA   +S +N+ R+EKSL LLTQNFVKLFVCSN++M+SLD
Sbjct: 131 SQGESLSQPTGSQNDNLNPNSA-FPRSLKND-RREKSLALLTQNFVKLFVCSNLEMISLD 188

Query: 174 DAAKLLLGNV-DTAMMR------TKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGL 226
           DAA+LLLG+  +++ MR       KVRRLYDIANVL+S+NLIEKTH  ++RKPAFRWLGL
Sbjct: 189 DAARLLLGDAYNSSTMRIPSGLAAKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGL 248

Query: 227 KGKTRSESGNSAQDPNTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDN 286
           KGKT +E+  S  +   NESRKR FG+D+TNISF RN++DLFM  GDF K   MEN  D+
Sbjct: 249 KGKTLNEA--SLYNSKQNESRKRAFGNDVTNISFARNRMDLFMG-GDFKKQKTMEN--DS 303

Query: 287 LNCQGQSEKSNSKQDAKQTTGC-YQFGPFAP---RKVGASENDNVKQV 330
             CQ      + KQ  KQT+   YQFGPFAP    K G+SEN  VKQ+
Sbjct: 304 GLCQ-----EDVKQGIKQTSAANYQFGPFAPAFVSKAGSSEN-KVKQL 345


>Medtr3g113800.1 | E2F transcription factor | HC |
           chr3:53087588-53083226 | 20130731
          Length = 363

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 12  TYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARK 71
           T NR   SLGLL   F+SL N+     + L+     L V++RRIYDI NVLE +G++ + 
Sbjct: 99  TVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILKVQKRRIYDITNVLEGIGLIEKT 158

Query: 72  AKNQYTWKG 80
           +KN   WKG
Sbjct: 159 SKNHIRWKG 167


>Medtr4g052000.1 | E2F transcription factor | HC |
           chr4:18814210-18820291 | 20130731
          Length = 460

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 15  RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
           R   SLGLL   F++L  +    ++ L++A   L V++RRIYDI NV E +G++ +K KN
Sbjct: 138 RYDSSLGLLTKKFIALIKQAEDGILDLNNAADTLEVQKRRIYDITNVFEGIGLIEKKLKN 197

Query: 75  QYTWKGFAV 83
           +  WKG  V
Sbjct: 198 RIQWKGLDV 206


>Medtr3g113800.2 | E2F transcription factor | HC |
           chr3:53087590-53083246 | 20130731
          Length = 309

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 12  TYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARK 71
           T NR   SLGLL   F+SL N+     + L+     L V++RRIYDI NVLE +G++ + 
Sbjct: 99  TVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILKVQKRRIYDITNVLEGIGLIEKT 158

Query: 72  AKNQYTWKG 80
           +KN   WKG
Sbjct: 159 SKNHIRWKG 167


>Medtr1g105110.1 | E2F transcription factor | HC |
           chr1:25000070-24993884 | 20130731
          Length = 463

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%)

Query: 15  RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
           R   SLGLL   F+ L  +    ++ L+ A   L V++RRIYDI NVLE +G++ +  KN
Sbjct: 142 RYDSSLGLLTKKFIHLLKRAEDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKNIKN 201

Query: 75  QYTWKGF 81
           +  WKG 
Sbjct: 202 RIYWKGI 208