Miyakogusa Predicted Gene

Lj1g3v0415370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0415370.1 Non Characterized Hit- tr|J3MX45|J3MX45_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB09G1,44.88,3e-19,DUF4228,Protein of unknown function
DUF4228,CUFF.25745.1
         (177 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g078300.1 | DUF4228 domain protein | HC | chr3:35276942-35...   236   6e-63
Medtr3g078300.2 | DUF4228 domain protein | HC | chr3:35276942-35...   204   3e-53
Medtr4g106790.1 | DUF4228 domain protein | HC | chr4:44080648-44...   178   2e-45
Medtr4g106790.2 | DUF4228 domain protein | HC | chr4:44080648-44...   158   2e-39
Medtr5g035430.1 | DUF4228 domain protein | HC | chr5:15407370-15...   126   1e-29
Medtr8g063200.1 | DUF4228 domain protein | HC | chr8:26461240-26...   119   2e-27
Medtr4g097220.1 | DUF4228 domain protein | HC | chr4:40063713-40...   100   7e-22
Medtr4g097220.2 | DUF4228 domain protein | HC | chr4:40063713-40...    96   2e-20

>Medtr3g078300.1 | DUF4228 domain protein | HC |
           chr3:35276942-35278238 | 20130731
          Length = 183

 Score =  236 bits (603), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 143/191 (74%), Gaps = 22/191 (11%)

Query: 1   MGNCQAIDAATIVIQHPNGKVERFYSPMSARLVMKMNPAHYVALLISTSTLSPNKDIGNC 60
           MGNCQAIDAAT+VIQHP+GK E+FYS +SA  VMKMNP H VALLIST T+ PNKDI NC
Sbjct: 1   MGNCQAIDAATLVIQHPSGKTEKFYSSLSASQVMKMNPGHCVALLIST-TVYPNKDIQNC 59

Query: 61  P-NKNSDTNTNNTYPVRLTRIKLLKPNDSLLLGHVYRLITAQEVMKGLKERKQAKMKQNM 119
             N N DT TN    VRLTRIKLLKPND+L+LGHVYRLIT QEVMKG++E+KQAK+KQNM
Sbjct: 60  SKNNNGDTKTNQ---VRLTRIKLLKPNDTLILGHVYRLITTQEVMKGIREKKQAKIKQNM 116

Query: 120 PGSGHKSDWVKGKIGLEMDNKAERRLDTEDNKVTKPEKPRPR-------------TRFWQ 166
               HK D VK  +GLEM+ KA +R DT+DNK TKPE+ + R             TRFWQ
Sbjct: 117 ---SHKPDLVKTTLGLEMEKKA-KRFDTKDNKATKPERSQGRTTSTNNAVIVTAKTRFWQ 172

Query: 167 PSLQSISEVVG 177
           PSLQSISE+  
Sbjct: 173 PSLQSISEIAS 183


>Medtr3g078300.2 | DUF4228 domain protein | HC |
           chr3:35276942-35278238 | 20130731
          Length = 183

 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/153 (70%), Positives = 123/153 (80%), Gaps = 9/153 (5%)

Query: 1   MGNCQAIDAATIVIQHPNGKVERFYSPMSARLVMKMNPAHYVALLISTSTLSPNKDIGNC 60
           MGNCQAIDAAT+VIQHP+GK E+FYS +SA  VMKMNP H VALLIST T+ PNKDI NC
Sbjct: 1   MGNCQAIDAATLVIQHPSGKTEKFYSSLSASQVMKMNPGHCVALLIST-TVYPNKDIQNC 59

Query: 61  P-NKNSDTNTNNTYPVRLTRIKLLKPNDSLLLGHVYRLITAQEVMKGLKERKQAKMKQNM 119
             N N DT TN    VRLTRIKLLKPND+L+LGHVYRLIT QEVMKG++E+KQAK+KQNM
Sbjct: 60  SKNNNGDTKTN---QVRLTRIKLLKPNDTLILGHVYRLITTQEVMKGIREKKQAKIKQNM 116

Query: 120 PGSGHKSDWVKGKIGLEMDNKAERRLDTEDNKV 152
               HK D VK  +GLEM+ KA +R DT+DNKV
Sbjct: 117 ---SHKPDLVKTTLGLEMEKKA-KRFDTKDNKV 145


>Medtr4g106790.1 | DUF4228 domain protein | HC |
           chr4:44080648-44082342 | 20130731
          Length = 187

 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 128/189 (67%), Gaps = 20/189 (10%)

Query: 1   MGNCQAIDAATIVIQHPNGKVERFYSPMSARLVMKMNPAHYVALLISTSTLSPNKDIGNC 60
           MGNCQAID AT+VIQ PNGK ER Y P++A  VMK +P HYVALLIST TL  +KD  NC
Sbjct: 1   MGNCQAIDTATLVIQQPNGKEERLYWPVTASEVMKTHPDHYVALLIST-TLCTSKDKENC 59

Query: 61  PNKNS-DTNTNNTYPVRLTRIKLLKPNDSLLLGHVYRLITAQEVMKGLKERKQAKMKQN- 118
            NK S D + NN   VR+TRIKLLKP D+LLLG VYRLI+AQEV KG+  +KQAKMK+N 
Sbjct: 60  SNKRSDDDDDNNNNKVRITRIKLLKPTDTLLLGQVYRLISAQEVTKGMWAKKQAKMKRNS 119

Query: 119 MPGSGHKSDWVKGKIGLEMDNKAERRLDTEDNKVTKPEKPRPRT-------------RFW 165
           +P S  KS+ +K +I    ++K   R + +DNK TK E+   RT             R W
Sbjct: 120 LPESAQKSNQIKERI----NDKTANRSEPKDNKETKSERHESRTKATTNGGNHNNKSRTW 175

Query: 166 QPSLQSISE 174
           QPSLQSI+E
Sbjct: 176 QPSLQSITE 184


>Medtr4g106790.2 | DUF4228 domain protein | HC |
           chr4:44080648-44082342 | 20130731
          Length = 167

 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 112/154 (72%), Gaps = 7/154 (4%)

Query: 1   MGNCQAIDAATIVIQHPNGKVERFYSPMSARLVMKMNPAHYVALLISTSTLSPNKDIGNC 60
           MGNCQAID AT+VIQ PNGK ER Y P++A  VMK +P HYVALLIST TL  +KD  NC
Sbjct: 1   MGNCQAIDTATLVIQQPNGKEERLYWPVTASEVMKTHPDHYVALLIST-TLCTSKDKENC 59

Query: 61  PNKNS-DTNTNNTYPVRLTRIKLLKPNDSLLLGHVYRLITAQEVMKGLKERKQAKMKQN- 118
            NK S D + NN   VR+TRIKLLKP D+LLLG VYRLI+AQEV KG+  +KQAKMK+N 
Sbjct: 60  SNKRSDDDDDNNNNKVRITRIKLLKPTDTLLLGQVYRLISAQEVTKGMWAKKQAKMKRNS 119

Query: 119 MPGSGHKSDWVKGKIGLEMDNKAERRLDTEDNKV 152
           +P S  KS+ +K +I    ++K   R + +DNKV
Sbjct: 120 LPESAQKSNQIKERI----NDKTANRSEPKDNKV 149


>Medtr5g035430.1 | DUF4228 domain protein | HC |
           chr5:15407370-15405451 | 20130731
          Length = 173

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 101/187 (54%), Gaps = 31/187 (16%)

Query: 1   MGNCQAIDAATIVIQHPNGKVERFYSPMSARLVMKMNPAHYVALLISTSTLSPNKDIGNC 60
           MGNCQA+DAA +VIQHP GK++R Y P++A  VMK NP HYV+L++              
Sbjct: 1   MGNCQAVDAAVLVIQHPCGKIDRLYWPVTASEVMKTNPGHYVSLIMPLPP---------- 50

Query: 61  PNKNSDTNTNNTYPVRLTRIKLLKPNDSLLLGHVYRLITAQEVMKGLKERKQAK------ 114
                         VR TR+KLL+PN++L LGH YRLIT QEVMK LK +K AK      
Sbjct: 51  ---QPQEQNQEQKTVRFTRVKLLRPNETLNLGHAYRLITNQEVMKVLKAKKHAKSMKTEG 107

Query: 115 --MKQNMPGSGHKSDWVKGKIGLEMD-NKAERRLDTEDNKVTKPEKPRP----RTRFWQP 167
             +K    GSG ++     K G E D  K  +    E NK        P    R++ W+P
Sbjct: 108 EAVKVEKEGSGCET-----KKGEESDQGKTYQGGRAERNKQRSGGSTNPAAVQRSKSWRP 162

Query: 168 SLQSISE 174
           SLQSISE
Sbjct: 163 SLQSISE 169


>Medtr8g063200.1 | DUF4228 domain protein | HC |
           chr8:26461240-26460444 | 20130731
          Length = 173

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 103/191 (53%), Gaps = 32/191 (16%)

Query: 1   MGNCQAIDAATIVIQHPNGKVERFYSPMSARLVMKMNPAHYVALLISTSTLSPNKDIGNC 60
           MGNCQ IDAA +VIQHP+GK+ER Y  +SA  VM+ NP +YV+L++              
Sbjct: 1   MGNCQTIDAAALVIQHPSGKIERLYWSVSASYVMRANPGYYVSLIMP------------L 48

Query: 61  PNKNSDTNTNNTY--PVRLTRIKLLKPNDSLLLGHVYRLITAQEVMKGLKERKQAK---- 114
           P +    N+NN    PV  TR+KLLKP+D+L LGH YRLIT QEV K +K +K+      
Sbjct: 49  PQEQEGENSNNEVKKPVLFTRVKLLKPDDTLTLGHAYRLITTQEVEKVMKAKKRKARGKT 108

Query: 115 ------MKQNMPGSGHKSDWV--KGKIGLEMDNKAERRLDTEDNKVTKPEKPRPRTRFWQ 166
                 M      S  +S+ +   G++   M      R D +  +V       PR + W+
Sbjct: 109 VEDVEMMHLEKENSACESEGMLDTGRMYQAM------RADRQRLRVVSVNPAVPRPKSWR 162

Query: 167 PSLQSISEVVG 177
           PSLQSISE  G
Sbjct: 163 PSLQSISEFSG 173


>Medtr4g097220.1 | DUF4228 domain protein | HC |
           chr4:40063713-40060326 | 20130731
          Length = 168

 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 98/192 (51%), Gaps = 43/192 (22%)

Query: 1   MGNCQAIDAATIVIQHPNGKVERFYSPMSARLVMKMNPAHYVALLISTSTLSPNKDIGNC 60
           MGNCQA + AT+VI  P  KVER Y  +SA  VM  NP HYVAL++S+ TL         
Sbjct: 1   MGNCQAAELATVVIHRPGNKVERIYWSVSAHEVMNSNPGHYVALVVSSPTL--------- 51

Query: 61  PNKNSDTNTNNTYPVRLTRIKLLKPNDSLLLGHVYRLITAQEVMKGLKERKQAKMKQNMP 120
                   + N  P  L  +KLL+P+D+LL+G VYRLI+ ++V+K    +K  K+ + + 
Sbjct: 52  -------KSENGMP--LKHLKLLRPDDTLLIGQVYRLISFEDVLKEFASKKCGKLGKLLK 102

Query: 121 GSGHKSDWVKGKIGLEMDN-----------KAERRLD-TEDNKVTKPEKPRPR-----TR 163
            SG++        G++M +           K ER    TE N      +   R     + 
Sbjct: 103 ESGNR--------GIQMKHRDFRAPNPSPVKVERETQRTESNGSRSTNRSVGRHIVGGSG 154

Query: 164 FWQPSLQSISEV 175
            W+P+LQSI+E 
Sbjct: 155 QWRPALQSIAEF 166


>Medtr4g097220.2 | DUF4228 domain protein | HC |
           chr4:40063713-40062352 | 20130731
          Length = 139

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 85/154 (55%), Gaps = 26/154 (16%)

Query: 1   MGNCQAIDAATIVIQHPNGKVERFYSPMSARLVMKMNPAHYVALLISTSTLSPNKDIGNC 60
           MGNCQA + AT+VI  P  KVER Y  +SA  VM  NP HYVAL++S+ TL         
Sbjct: 1   MGNCQAAELATVVIHRPGNKVERIYWSVSAHEVMNSNPGHYVALVVSSPTLK-------- 52

Query: 61  PNKNSDTNTNNTYPVRLTRIKLLKPNDSLLLGHVYRLITAQEVMKGLKERKQAKMKQNMP 120
                   + N  P  L  +KLL+P+D+LL+G VYRLI+ ++V+K    +K  K+ + + 
Sbjct: 53  --------SENGMP--LKHLKLLRPDDTLLIGQVYRLISFEDVLKEFASKKCGKLGKLLK 102

Query: 121 GSGHKSDWVKGKIGLEMDNKAERRLDTEDNKVTK 154
            SG++        G++M ++  R  +    KV K
Sbjct: 103 ESGNR--------GIQMKHRDFRAPNPSPVKVIK 128