Miyakogusa Predicted Gene

Lj1g3v0415000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0415000.1 Non Characterized Hit- tr|D7MMX4|D7MMX4_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,47.29,5e-19,seg,NULL; NHL REPEAT-CONTAINING PROTEIN,NULL;
FAMILY NOT NAMED,NULL,CUFF.25710.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g078240.1 | NHL domain protein | HC | chr3:35240415-352416...   129   1e-30
Medtr4g106650.1 | hypothetical protein | HC | chr4:44011506-4401...   103   8e-23
Medtr6g007727.1 | NHL domain protein | HC | chr6:1857266-1857992...    80   6e-16
Medtr2g461190.1 | stress induced protein | HC | chr2:25246302-25...    56   1e-08
Medtr4g116530.1 | stress induced protein | HC | chr4:48276959-48...    51   5e-07

>Medtr3g078240.1 | NHL domain protein | HC | chr3:35240415-35241616
           | 20130731
          Length = 143

 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 95/165 (57%), Gaps = 40/165 (24%)

Query: 1   MEELDSTGNWQDTSNSLC-----CFGSRRSTTS--WWERVRATXXXXXXXXXXXHPTTWS 53
           M    S+ + ++TSN+ C     CFGSR STT+  WWERVRA+                 
Sbjct: 1   MNHDSSSLSNEETSNTRCTFCFPCFGSRHSTTTEPWWERVRASSV--------------- 45

Query: 54  AGDRWWSRGFMRAREWSEIVAGPRWKTFIXXXXXXXXXXXXXHAGKYQYDPLSYALNFDE 113
                 SRGFM+ REWSEIVAGPRWKTFI             HAGKYQYDPLSYALNFDE
Sbjct: 46  ------SRGFMKIREWSEIVAGPRWKTFI-RRFNRNKSGGFRHAGKYQYDPLSYALNFDE 98

Query: 114 GPGQNGDFEDDVVSDGFRNFSARYAMAPP--------LRQDVVVS 150
             GQNG+FE+D   DGFRNFSARY  A P        L Q+V VS
Sbjct: 99  --GQNGEFEND-SPDGFRNFSARYVAAVPTLKSDSTDLEQNVAVS 140


>Medtr4g106650.1 | hypothetical protein | HC |
           chr4:44011506-44012525 | 20130731
          Length = 149

 Score =  103 bits (256), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 73/134 (54%), Gaps = 25/134 (18%)

Query: 11  QDTSNSLC---CFGSRRSTTSWWERVRATXXXXXXXXXXXHPTTWSAGDRWWSRGFM--- 64
           Q  S++LC   CF SRR +  WWERVR+            HP T    DRWWSRG     
Sbjct: 16  QKRSSALCFPTCFASRRRSV-WWERVRSASFSQS------HPPT--TADRWWSRGLKALK 66

Query: 65  RAREWSEIVAGPRWKTFIXXXXXXXXXXXXXHAGKYQYDPLSYALNFDEGPGQNGDFEDD 124
           + R WSEIVAGPRWK FI                K QYDPLSYALNFDE  GQN D  D 
Sbjct: 67  KLRNWSEIVAGPRWKNFI----RKFNNHRSKRMTKCQYDPLSYALNFDE--GQNEDSHD- 119

Query: 125 VVSDGFRNFSARYA 138
              DGFRNFS RYA
Sbjct: 120 ---DGFRNFSTRYA 130


>Medtr6g007727.1 | NHL domain protein | HC | chr6:1857266-1857992 |
           20130731
          Length = 156

 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 64/126 (50%), Gaps = 21/126 (16%)

Query: 17  LCCFGSRRSTTSWWERVRATXXXXXXXXXXXHPTTWSAGDRWWSRGFMRAREWSEIVAGP 76
           + CF S  S+ SWWER++                  +   +WW RG+M+ RE SEIVAGP
Sbjct: 34  IPCFSSETSSPSWWERIQIQSPEK------------NHHHQWWFRGWMKVRELSEIVAGP 81

Query: 77  RWKTFIXXXXXXXXXXXXXHAGKYQYDPLSYALNFDEGPG-QNGDFEDDVVSDGFRNFSA 135
           +WKTFI               G   YDP SYALNFD+G   ++G+F       G+  FSA
Sbjct: 82  KWKTFI--RRFGKNRNSYVKQGTLNYDPSSYALNFDDGATREDGNFY------GYGGFSA 133

Query: 136 RYAMAP 141
           RYA  P
Sbjct: 134 RYAAVP 139


>Medtr2g461190.1 | stress induced protein | HC |
           chr2:25246302-25247199 | 20130731
          Length = 141

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 56  DRWWSRGFMRAREWSEIVAGPRWKTFIXXXXXXXXXXXXXHAGKYQYDPLSYALNFDEGP 115
           D WW     + +E SE++AGP+WKTFI               GK+QYD  SYALNF  G 
Sbjct: 57  DSWWVCKLRKMKEVSEVIAGPKWKTFI---RKISMYGKKQQKGKFQYDEHSYALNFSSG- 112

Query: 116 GQNGDFEDDVVSDGFRNFSARYAMAPP 142
                 EDD   D   +FSAR++   P
Sbjct: 113 ---AQSEDD---DLPHSFSARFSAPFP 133


>Medtr4g116530.1 | stress induced protein | HC |
           chr4:48276959-48277730 | 20130731
          Length = 149

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 16/117 (13%)

Query: 3   ELDSTGNWQDTSNSLCCFG-SRRSTTSWWERVRATXXXXXXXXXXXHPTTWSAGDR---- 57
           E++S  ++++T+   C  G SR  T+ WW+R                    S G+R    
Sbjct: 14  EMESKQDFEETNGYGCGCGWSRIFTSKWWQRHDEEGKHLLNEK--------SEGNRGEET 65

Query: 58  WWSRGFMRAREWSEIVAGPRWKTFIXXXXXXXXXXXXXHAGKYQYDPLSYALNFDEG 114
           W      + +E SE++AGP+WKTF+                ++QYD  SYALNF+ G
Sbjct: 66  WMMDKLKKMKETSEVIAGPKWKTFL---RKISGYGKKQQKHRFQYDAHSYALNFNSG 119