Miyakogusa Predicted Gene

Lj1g3v0375290.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0375290.1 tr|B9MVG9|B9MVG9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_677769 PE=4
SV=1,29.56,0.000000000000002,seg,NULL,CUFF.25596.1
         (373 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g077500.1 | transmembrane protein, putative | HC | chr3:34...   580   e-166
Medtr3g111540.1 | transmembrane protein, putative | HC | chr3:52...   149   5e-36
Medtr4g027070.1 | transmembrane protein, putative | HC | chr4:93...    55   8e-08

>Medtr3g077500.1 | transmembrane protein, putative | HC |
           chr3:34811954-34816546 | 20130731
          Length = 376

 Score =  580 bits (1494), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 289/358 (80%), Positives = 320/358 (89%), Gaps = 6/358 (1%)

Query: 20  PFQRTRAPASQLSLSQGVFVNQLSVAQLKIHTK----DKSWRFKFTNGKPKLKGRFQKQH 75
           PFQR+     QLS S+ +FVNQ++ ++L+I TK    DKS +FKF N +P+LKGRFQKQ 
Sbjct: 21  PFQRSSP--HQLSFSRRLFVNQINGSRLRISTKVSWLDKSCQFKFINRRPQLKGRFQKQQ 78

Query: 76  SALFVVSEDQSEHSELEIAATVPENNNNIVQNFSPASNSSYHLSGSDGKPGLISFYSRPY 135
           +ALFVVSEDQS+++ELEI A VPENNNNI Q+ SPASN S+HLSGSDGKPG ISFY+RPY
Sbjct: 79  NALFVVSEDQSQNNELEIPAPVPENNNNIAQDISPASNPSFHLSGSDGKPGFISFYNRPY 138

Query: 136 GRDNEVLLSNPEKSQNSILWFMGPAVLVASFIFPSLYMRKLLSIIFEDSLLTDFLILFFT 195
            RD+E+LL N E+SQN+ILWF+GPAVLVASFIFPSLY+RKLLSIIFEDSLLTDFLILFFT
Sbjct: 139 RRDSEILLLNSERSQNNILWFVGPAVLVASFIFPSLYLRKLLSIIFEDSLLTDFLILFFT 198

Query: 196 EAIFYCGVSLFLFLLDHLRRPVQLDIVANNGNTLPPQMGQRISSVATLVLSLVIPMVTMG 255
           EAIFY GV++FLFLLDHLRRP+QLD    N +TLPPQ+GQ+ISSVATLVLSLVIPMVTMG
Sbjct: 199 EAIFYGGVAVFLFLLDHLRRPIQLDTATKNTDTLPPQLGQKISSVATLVLSLVIPMVTMG 258

Query: 256 LVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWCAIPFIFQVYRLHQLNRAAQL 315
           LVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSW AIP IFQVYRLHQLNRAAQL
Sbjct: 259 LVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWSAIPLIFQVYRLHQLNRAAQL 318

Query: 316 VTALSSTVRGAEMTSHNMAIISSLGTLLNVLQFLGVICIWSLSSFLMRFIPSASTTMQ 373
           VTALS TVRGAE+TSHNMAI SSLGTLLNVLQFLGVICIWSLSSFLMRFIPSAS  MQ
Sbjct: 319 VTALSFTVRGAELTSHNMAINSSLGTLLNVLQFLGVICIWSLSSFLMRFIPSASNLMQ 376


>Medtr3g111540.1 | transmembrane protein, putative | HC |
           chr3:52121922-52125125 | 20130731
          Length = 354

 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 165/324 (50%), Gaps = 17/324 (5%)

Query: 48  KIHTKDKSWRFKFTNGKPKLKG--RFQKQHSALFVVSEDQSEHSELEIAATVPENNNNIV 105
           K   +  S  FK    +P L G  +FQ+      + + D + +  LE+     + ++++ 
Sbjct: 37  KFGFEKSSKSFKQVIKEPSLLGLNKFQRT----LIHASDSTVNGALEVEL---KQSSSVP 89

Query: 106 QNFSPASNSSYHLSGSDGKPGLISFYSRPYGRDNE-VLLSNP-EKSQNSILWFMGPAVLV 163
            N   +    +H     GK G +SFY   +    E  L+S P ++ ++S LW + P   +
Sbjct: 90  VNVGYSGLEPFH-----GKSGSVSFYGLTHQSVEEGKLVSAPFKQEESSYLWVLAPVAFI 144

Query: 164 ASFIFPSLYMRKLLSIIFEDSLLTDFLILFFTEAIFYCGVSLFLFLLDHLRRPVQLDIVA 223
           +S I P  ++  +++  F D +L D +  F +EA+FY G++ FL + D ++RP  L   +
Sbjct: 145 SSLILPQFFVGTVVAAFFNDLILKDIVTSFSSEALFYVGLATFLQVADRVQRPY-LQYSS 203

Query: 224 NNGNTLPPQMGQRISSVATLVLSLVIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFE 283
                +    G   S+  T  L + +P++ + + W     AA   +AP+LVG   QFAFE
Sbjct: 204 KRWGLITGLKGYITSAFLTTGLKIAVPLLLLYVTWSVVRMAAVVAIAPFLVGCAAQFAFE 263

Query: 284 QYARYRKSPSWCAIPFIFQVYRLHQLNRAAQLVTALSSTVRGAEMTSHNMAIISSLGTLL 343
           ++   R S  W  +P IF+VYRL+QL +AA     L  +++G   +   +    +L  ++
Sbjct: 264 RHLDRRGSSCWPLVPIIFEVYRLYQLTKAANFSEKLMYSMKGLPASPEVLERSGALFGMM 323

Query: 344 NVLQFLGVICIWSLSSFLMRFIPS 367
            + Q LG++CIWSL +FL+R  PS
Sbjct: 324 VIFQLLGIVCIWSLMTFLLRLFPS 347


>Medtr4g027070.1 | transmembrane protein, putative | HC |
           chr4:9319572-9314496 | 20130731
          Length = 344

 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 31/210 (14%)

Query: 154 LWFMGPAVLVASFIFPSLYMRKLLSIIFEDSLLTDFLILFFTEAIFYCGVSLFLFLLDHL 213
           +W +GP++L+A+ + P+L++   +S IF    +   L L   + IF  G +LFL + D  
Sbjct: 122 MWLLGPSILLATGMVPTLWLP--ISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMADSC 179

Query: 214 RRPVQLDIVANNGNTLPPQMGQRISSVATLVLSLVIPMVTM-----GLVWPWTGPAASAT 268
            RP           +  P   Q  + VATL    ++P + M     G + P     +SA 
Sbjct: 180 SRPKN---PTQEIKSKAPFSYQFWNIVATLT-GFIVPSLLMFGSQKGFLQPQLPFISSAV 235

Query: 269 LAPYLVGIV-VQFAFEQYARYRKSPSWCAIPFIFQVYRLHQLNRAAQLVTALSSTVRGAE 327
           L    + ++ VQ   E    Y +SP W   P I++ YR+ QL R  +L         GAE
Sbjct: 236 LLGPYLLLLSVQILTELLTWYWQSPVWLVTPIIYEAYRILQLMRGLKL---------GAE 286

Query: 328 MTSHNMAIISSLGTLLNVLQFLGVICIWSL 357
           +T+           +++ ++  G++C W L
Sbjct: 287 LTAP--------AWMMHTIR--GLVCWWVL 306