Miyakogusa Predicted Gene

Lj1g3v0342030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0342030.1 Non Characterized Hit- tr|D7SHM6|D7SHM6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,42.27,0.000000000008,
,gene.Ljchr1_pseudomol_20120830.path1.gene858.1
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g077420.1 | transcription factor, putative | HC | chr3:347...   168   1e-42

>Medtr3g077420.1 | transcription factor, putative | HC |
           chr3:34751208-34755524 | 20130731
          Length = 495

 Score =  168 bits (425), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 92/112 (82%), Gaps = 3/112 (2%)

Query: 3   LGSVGKIASDMKHVHALEGNHDCIVDMIKALEDPRFSKLCMQVGRTYLMIHEQTHLSSDL 62
           +GS+ K+ASDMKHVHALEG  DCIVDMIK  EDPRFSK CMQVG+TYLMIHEQ++LSSD 
Sbjct: 384 IGSIRKVASDMKHVHALEGTRDCIVDMIKTFEDPRFSKFCMQVGKTYLMIHEQSNLSSDF 443

Query: 63  ESTSMVDLVGLNVLKACLPSQVYTPEDLIKFIDTAVS---CCYVESSVLHVA 111
           ES S+VDLV L VLKAC  SQ+YTPEDLIKFID  ++      +ESSVLHVA
Sbjct: 444 ESASLVDLVDLCVLKACTSSQIYTPEDLIKFIDNTIAELGDINMESSVLHVA 495