Miyakogusa Predicted Gene

Lj1g3v0318200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0318200.1 tr|A2A1E8|A2A1E8_LOTJA Nucleoporin OS=Lotus
japonicus GN=NUP85 PE=2 SV=1,99.86,0,SUBFAMILY NOT NAMED,NULL; FROUNT
PROTEIN-RELATED,NULL; Nucleopor_Nup85,Nucleoporin Nup85-like;
seg,N,CUFF.25538.1
         (711 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g006690.1 | Nup85 nucleoporin protein | HC | chr1:110219-9...  1196   0.0  
Medtr1g006690.2 | Nup85 nucleoporin protein | HC | chr1:108027-9...   878   0.0  

>Medtr1g006690.1 | Nup85 nucleoporin protein | HC |
           chr1:110219-98846 | 20130731
          Length = 710

 Score = 1196 bits (3095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/712 (81%), Positives = 624/712 (87%), Gaps = 3/712 (0%)

Query: 1   MPSDTVGNGVLVPFSGE-GSDSVAVYPLNHGLSLPISRVAISWSRGNSLRVSLFAEPSAT 59
           M  +TV NG L+PFSGE  +DS+A+YPL+H L+ P+SR+AISWSRGNSLRVSLFAEPS T
Sbjct: 1   MSPNTVDNGTLIPFSGETNNDSLAIYPLHHTLTRPVSRLAISWSRGNSLRVSLFAEPSQT 60

Query: 60  SPDSQASGAKVVEVKLSGEDPEISDSNWRRIAYGSVTPFALLQXXXXXXXXXXXXXXXYH 119
           S      GAKV+EVKL G DPEI D++WRRIAYGSV PFALLQ               Y 
Sbjct: 61  S--DAGDGAKVIEVKLGGGDPEIDDADWRRIAYGSVAPFALLQSRRSAISNMSKSPSTYQ 118

Query: 120 VDWWEHVLEYSKDIASLLGGPKLSPGPIIEDPNAIATKCEEPTCLKAAWELLEMFYVDKR 179
           +DWWEHVL+YSK+I SLL GPKL P PII+DPN I  K EEPTCLKAAWEL+E+FYVDK+
Sbjct: 119 LDWWEHVLQYSKEITSLLAGPKLGPSPIIDDPNEIVKKNEEPTCLKAAWELMEIFYVDKQ 178

Query: 180 SQAWLPERLVDWLADFDSLFTSTHETIHGKLVNFQKELVNIQVIEDDPRYWEVMSSALSV 239
           SQAWLPERLVDWLAD+DSLFTST ETIHGKLV+FQ +LVNIQVIEDDPRYWEVMSSALSV
Sbjct: 179 SQAWLPERLVDWLADYDSLFTSTQETIHGKLVDFQNDLVNIQVIEDDPRYWEVMSSALSV 238

Query: 240 GWLDIVVKMLRLHGSYQLDQLSSRERENGLVEVVAVLISKMPRLRPESAVENLGECFKSK 299
           GWLDIVVKMLRLHGSYQLDQLS+RE ENGLVE VAVLISKMPRLRPESA  NLGECFKSK
Sbjct: 239 GWLDIVVKMLRLHGSYQLDQLSNRELENGLVEAVAVLISKMPRLRPESAAGNLGECFKSK 298

Query: 300 PDFIKAWEKWRSQITKLDCSPFWIQCDNQQTCDGLRNLLQIMLGNTESLCTATCHWIELY 359
           PDFIKAWEKWRSQITKLDCSPFWIQCDNQQT  GLRNLLQ+MLGNTESLCTA+C+W+ELY
Sbjct: 299 PDFIKAWEKWRSQITKLDCSPFWIQCDNQQTRVGLRNLLQVMLGNTESLCTASCYWVELY 358

Query: 360 VSHFLYIRPFTTGIESMYNLAQKCMQLKPPSSIHKLTGLMIGILGENTEVVLAECSREFG 419
           +SHFLYIRPF  G+ESMYNLAQKC+QLKPP+  H+LTGL+IGILGENTEVVLAE SREFG
Sbjct: 359 ISHFLYIRPFMIGVESMYNLAQKCIQLKPPTGTHRLTGLLIGILGENTEVVLAEISREFG 418

Query: 420 PWMVAHAVELLTAGSEQAEVLLHDEHYNLGGISIVELHRLAYAQVLSSHALTWQIAPIYL 479
           PWMVAHAVELLTAGSEQAE+LL+DE YNLGGIS+VELHRLAYAQVLSSHALTWQIAPIYL
Sbjct: 419 PWMVAHAVELLTAGSEQAEILLYDERYNLGGISMVELHRLAYAQVLSSHALTWQIAPIYL 478

Query: 480 TSCMKQGMGLLENLLYRQSVQHNDTLLKNIEICRLYELDHISSKIMKVAGVFHWKHGRKG 539
           TSCMKQGMGLLENLLYRQSVQHN+ LLKNIEICRLYELDHISS IMKVAGV+HWKHGRKG
Sbjct: 479 TSCMKQGMGLLENLLYRQSVQHNNMLLKNIEICRLYELDHISSNIMKVAGVYHWKHGRKG 538

Query: 540 AGVFWLQQAQDASCLGRIALQLFDAVGKSISDESFKQWEGIIELLGSESKPAGGLEFLHK 599
           AGVFWLQQ+QD +CL RIA QLFD+VGKSISDESFKQWEG+IELLGSESKPAGGLEFLHK
Sbjct: 539 AGVFWLQQSQDTNCLDRIAQQLFDSVGKSISDESFKQWEGLIELLGSESKPAGGLEFLHK 598

Query: 600 YRDFKKSLQQVSGGKSTEAARQAVGSLILLMKNPSTPPRFWLPLLYDSLKLLNWKDCXXX 659
           YRDFKKSLQ V  GKST+AARQAVGSLILLMKNPSTP RFWLPLL+DSLKLLNWKD    
Sbjct: 599 YRDFKKSLQMVYSGKSTDAARQAVGSLILLMKNPSTPQRFWLPLLFDSLKLLNWKDSPLL 658

Query: 660 XXXXXXXXXXXXXXXXXARLRPHFTEPSLPPEALSSVRLALATNLGRAILDE 711
                            AR RPHFTEP+LPP+ALSS+RLALATNLGRAILDE
Sbjct: 659 SVSETNLLLNKLQEFSLARQRPHFTEPNLPPQALSSIRLALATNLGRAILDE 710


>Medtr1g006690.2 | Nup85 nucleoporin protein | HC |
           chr1:108027-98846 | 20130731
          Length = 526

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/494 (85%), Positives = 449/494 (90%)

Query: 218 VNIQVIEDDPRYWEVMSSALSVGWLDIVVKMLRLHGSYQLDQLSSRERENGLVEVVAVLI 277
            ++ VIEDDPRYWEVMSSALSVGWLDIVVKMLRLHGSYQLDQLS+RE ENGLVE VAVLI
Sbjct: 33  TDLFVIEDDPRYWEVMSSALSVGWLDIVVKMLRLHGSYQLDQLSNRELENGLVEAVAVLI 92

Query: 278 SKMPRLRPESAVENLGECFKSKPDFIKAWEKWRSQITKLDCSPFWIQCDNQQTCDGLRNL 337
           SKMPRLRPESA  NLGECFKSKPDFIKAWEKWRSQITKLDCSPFWIQCDNQQT  GLRNL
Sbjct: 93  SKMPRLRPESAAGNLGECFKSKPDFIKAWEKWRSQITKLDCSPFWIQCDNQQTRVGLRNL 152

Query: 338 LQIMLGNTESLCTATCHWIELYVSHFLYIRPFTTGIESMYNLAQKCMQLKPPSSIHKLTG 397
           LQ+MLGNTESLCTA+C+W+ELY+SHFLYIRPF  G+ESMYNLAQKC+QLKPP+  H+LTG
Sbjct: 153 LQVMLGNTESLCTASCYWVELYISHFLYIRPFMIGVESMYNLAQKCIQLKPPTGTHRLTG 212

Query: 398 LMIGILGENTEVVLAECSREFGPWMVAHAVELLTAGSEQAEVLLHDEHYNLGGISIVELH 457
           L+IGILGENTEVVLAE SREFGPWMVAHAVELLTAGSEQAE+LL+DE YNLGGIS+VELH
Sbjct: 213 LLIGILGENTEVVLAEISREFGPWMVAHAVELLTAGSEQAEILLYDERYNLGGISMVELH 272

Query: 458 RLAYAQVLSSHALTWQIAPIYLTSCMKQGMGLLENLLYRQSVQHNDTLLKNIEICRLYEL 517
           RLAYAQVLSSHALTWQIAPIYLTSCMKQGMGLLENLLYRQSVQHN+ LLKNIEICRLYEL
Sbjct: 273 RLAYAQVLSSHALTWQIAPIYLTSCMKQGMGLLENLLYRQSVQHNNMLLKNIEICRLYEL 332

Query: 518 DHISSKIMKVAGVFHWKHGRKGAGVFWLQQAQDASCLGRIALQLFDAVGKSISDESFKQW 577
           DHISS IMKVAGV+HWKHGRKGAGVFWLQQ+QD +CL RIA QLFD+VGKSISDESFKQW
Sbjct: 333 DHISSNIMKVAGVYHWKHGRKGAGVFWLQQSQDTNCLDRIAQQLFDSVGKSISDESFKQW 392

Query: 578 EGIIELLGSESKPAGGLEFLHKYRDFKKSLQQVSGGKSTEAARQAVGSLILLMKNPSTPP 637
           EG+IELLGSESKPAGGLEFLHKYRDFKKSLQ V  GKST+AARQAVGSLILLMKNPSTP 
Sbjct: 393 EGLIELLGSESKPAGGLEFLHKYRDFKKSLQMVYSGKSTDAARQAVGSLILLMKNPSTPQ 452

Query: 638 RFWLPLLYDSLKLLNWKDCXXXXXXXXXXXXXXXXXXXXARLRPHFTEPSLPPEALSSVR 697
           RFWLPLL+DSLKLLNWKD                     AR RPHFTEP+LPP+ALSS+R
Sbjct: 453 RFWLPLLFDSLKLLNWKDSPLLSVSETNLLLNKLQEFSLARQRPHFTEPNLPPQALSSIR 512

Query: 698 LALATNLGRAILDE 711
           LALATNLGRAILDE
Sbjct: 513 LALATNLGRAILDE 526