Miyakogusa Predicted Gene

Lj1g3v0318000.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0318000.2 Non Characterized Hit- tr|E1Z9B1|E1Z9B1_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,40.83,3e-17,TIGR00046: RNA methyltransferase, RsmE
family,Ribosomal RNA small subunit methyltransferase E;
Methy,CUFF.25518.2
         (239 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g106055.3 | ribosomal RNA small subunit methyltransferase ...   398   e-111
Medtr1g106055.2 | ribosomal RNA small subunit methyltransferase ...   398   e-111
Medtr1g106055.1 | ribosomal RNA small subunit methyltransferase ...   397   e-111

>Medtr1g106055.3 | ribosomal RNA small subunit methyltransferase E |
           HC | chr1:47990418-47994872 | 20130731
          Length = 286

 Score =  398 bits (1023), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/240 (80%), Positives = 214/240 (89%), Gaps = 1/240 (0%)

Query: 1   MLQTLV-PVTFRFVNRSWLPSLCVRAFSSSSEYGDQSRGGLPRFFSETLPPSKGNVVRVQ 59
           MLQTLV P  FRF NR  L     R  S +S+YGDQSRGGLPRF+SE LPPSKGNV+RV+
Sbjct: 1   MLQTLVVPARFRFANRISLRRSLSRIRSFNSDYGDQSRGGLPRFYSEILPPSKGNVIRVK 60

Query: 60  GDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLH 119
           GDEFWHMTKVLRLS + RVQLFNGKGGLVEGCI+N+DRTG+DF+ALTD++++PP N QLH
Sbjct: 61  GDEFWHMTKVLRLSTNARVQLFNGKGGLVEGCIQNIDRTGLDFIALTDLKLVPPQNFQLH 120

Query: 120 VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQR 179
           VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS SISENRVDRLERVILAASKQCQR
Sbjct: 121 VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQR 180

Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
           LHEMI KPPV+I D+ HLIAQSKL L+ATA+ATPVLNALTS EK+ SGLI++GPEGDFTE
Sbjct: 181 LHEMILKPPVEIGDILHLIAQSKLSLVATAEATPVLNALTSPEKETSGLIVVGPEGDFTE 240


>Medtr1g106055.2 | ribosomal RNA small subunit methyltransferase E |
           HC | chr1:47990418-47994872 | 20130731
          Length = 286

 Score =  398 bits (1023), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/240 (80%), Positives = 214/240 (89%), Gaps = 1/240 (0%)

Query: 1   MLQTLV-PVTFRFVNRSWLPSLCVRAFSSSSEYGDQSRGGLPRFFSETLPPSKGNVVRVQ 59
           MLQTLV P  FRF NR  L     R  S +S+YGDQSRGGLPRF+SE LPPSKGNV+RV+
Sbjct: 1   MLQTLVVPARFRFANRISLRRSLSRIRSFNSDYGDQSRGGLPRFYSEILPPSKGNVIRVK 60

Query: 60  GDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLH 119
           GDEFWHMTKVLRLS + RVQLFNGKGGLVEGCI+N+DRTG+DF+ALTD++++PP N QLH
Sbjct: 61  GDEFWHMTKVLRLSTNARVQLFNGKGGLVEGCIQNIDRTGLDFIALTDLKLVPPQNFQLH 120

Query: 120 VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQR 179
           VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS SISENRVDRLERVILAASKQCQR
Sbjct: 121 VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQR 180

Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
           LHEMI KPPV+I D+ HLIAQSKL L+ATA+ATPVLNALTS EK+ SGLI++GPEGDFTE
Sbjct: 181 LHEMILKPPVEIGDILHLIAQSKLSLVATAEATPVLNALTSPEKETSGLIVVGPEGDFTE 240


>Medtr1g106055.1 | ribosomal RNA small subunit methyltransferase E |
           HC | chr1:47990430-47994872 | 20130731
          Length = 280

 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/240 (80%), Positives = 214/240 (89%), Gaps = 1/240 (0%)

Query: 1   MLQTLV-PVTFRFVNRSWLPSLCVRAFSSSSEYGDQSRGGLPRFFSETLPPSKGNVVRVQ 59
           MLQTLV P  FRF NR  L     R  S +S+YGDQSRGGLPRF+SE LPPSKGNV+RV+
Sbjct: 1   MLQTLVVPARFRFANRISLRRSLSRIRSFNSDYGDQSRGGLPRFYSEILPPSKGNVIRVK 60

Query: 60  GDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLH 119
           GDEFWHMTKVLRLS + RVQLFNGKGGLVEGCI+N+DRTG+DF+ALTD++++PP N QLH
Sbjct: 61  GDEFWHMTKVLRLSTNARVQLFNGKGGLVEGCIQNIDRTGLDFIALTDLKLVPPQNFQLH 120

Query: 120 VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQCQR 179
           VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERS SISENRVDRLERVILAASKQCQR
Sbjct: 121 VFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQR 180

Query: 180 LHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDFTE 239
           LHEMI KPPV+I D+ HLIAQSKL L+ATA+ATPVLNALTS EK+ SGLI++GPEGDFTE
Sbjct: 181 LHEMILKPPVEIGDILHLIAQSKLSLVATAEATPVLNALTSPEKETSGLIVVGPEGDFTE 240