Miyakogusa Predicted Gene
- Lj1g3v0295860.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0295860.1 Non Characterized Hit- tr|I1JXE6|I1JXE6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,77.2,0,dnaX_nterm:
DNA polymerase III, subunit gamma and ,DNA polymerase III, subunit
gamma/ tau; REPLICATI,CUFF.25502.1
(919 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g075260.1 | DNA polymerase III subunit gamma/tau | HC | ch... 1085 0.0
Medtr4g104350.1 | DNA polymerase III subunit gamma/tau | HC | ch... 1054 0.0
Medtr4g104350.2 | DNA polymerase III subunit gamma/tau | HC | ch... 1048 0.0
Medtr3g075260.2 | DNA polymerase III subunit gamma/tau | HC | ch... 805 0.0
Medtr4g134530.1 | DNA polymerase III subunit gamma/tau | HC | ch... 302 1e-81
Medtr2g017980.1 | DNA polymerase III subunit gamma/tau | HC | ch... 286 9e-77
Medtr2g017980.2 | DNA polymerase III subunit gamma/tau | HC | ch... 286 9e-77
Medtr3g088380.1 | replication factor C subunit 2 | HC | chr3:401... 62 3e-09
Medtr3g088380.2 | replication factor C subunit 2 | HC | chr3:401... 62 3e-09
Medtr4g102860.1 | replication factor C subunit 2 | HC | chr4:426... 51 7e-06
>Medtr3g075260.1 | DNA polymerase III subunit gamma/tau | HC |
chr3:34261613-34257458 | 20130731
Length = 903
Score = 1085 bits (2807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/939 (61%), Positives = 674/939 (71%), Gaps = 58/939 (6%)
Query: 1 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFPEA 60
MDGRRHSVD+PISK LVALRRVRSL+DPSTNS+ S LIDN+ WEN +GNG SL+FP+A
Sbjct: 3 MDGRRHSVDLPISKALVALRRVRSLKDPSTNSVTNHSPLIDNLHWENSTGNG-SLMFPDA 61
Query: 61 SRECDSDDNVDFTSRNLGFKGQRVQDATDFKLDCGLLGSRLKPSGMSFQDSQHNDDELVY 120
DSDDN+ +SR+LGFKG R DAT +L GLL SR
Sbjct: 62 ---FDSDDNLA-SSRHLGFKGGRELDATSLELSHGLLNSR-------------------- 97
Query: 121 SNPNRQCXXXXXXXXXXXXXNHGGEGLDLASIEPHSNNFRDGESCFIATAKSSQLGRIDH 180
PNR+ NHGG+GLD+ N+F+DG + +SS+LGR+DH
Sbjct: 98 --PNRRSVYGNKSPSESCGSNHGGKGLDI-------NDFKDGGLYYREIGRSSKLGRMDH 148
Query: 181 SRSDKKSLRANQVRPAQVEGGIVNHVGNPCLSVHDDFSPHSTSVDINQDFDVLDNNDNGC 240
++ +K LR NQV+P+ V G I +++ PC V + SP + +N+DF VLDN +NGC
Sbjct: 149 AKPARKLLRKNQVKPSDVVGDIASNLSTPCPCVRNALSPQGSLALVNKDFGVLDNRENGC 208
Query: 241 GISFCWSKSPRFRESNLYSKIEDRPLILHQVDDTDLHGDRNMRHDGGDISPTLETPRSLS 300
G + C S SPRFRESNL + EDR LIL+ VDDTDLHG RN+R +GG+ SP LETPR LS
Sbjct: 209 GKNCCLSNSPRFRESNLCFEKEDRSLILNCVDDTDLHGHRNVRDNGGESSPNLETPRMLS 268
Query: 301 MKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSV 360
MKFRP SF DLVGQ++VVRSLL A+S I SFYLFHGPRGTGKTSAS+IFA ALNC+S
Sbjct: 269 MKFRPLSFDDLVGQDMVVRSLLAALSSRRITSFYLFHGPRGTGKTSASKIFACALNCISN 328
Query: 361 EGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDE 420
+ Q+PCGLCRECVLFFSGRSK+VKEVDSVRIN TDQVKSLVKNAC PP+SSRFKVFIIDE
Sbjct: 329 KKQRPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVKNACTPPVSSRFKVFIIDE 388
Query: 421 CQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRL 480
CQLL ETWA LSNN +N+S+H VFVMIT DLDKLP+SAVSRAQ Y+FPKV+DA+IAC+L
Sbjct: 389 CQLLNPETWACLSNNQDNISQHAVFVMITTDLDKLPQSAVSRAQKYYFPKVQDANIACKL 448
Query: 481 EKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXVHELTGIVXXXX 540
EKIC EEGLDF+QAALD IAA+SCGSVRDAE+MLDQ V+ELTGIV
Sbjct: 449 EKICTEEGLDFEQAALDLIAARSCGSVRDAEIMLDQLSLLGKKIKISLVYELTGIVSDDE 508
Query: 541 XXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEVRSKF 600
NTVIRARELMRSRI PLQLVSQL NLIMDILAG +GG EVRSK+
Sbjct: 509 LLDLLDLALSPDTSNTVIRARELMRSRIDPLQLVSQLVNLIMDILAGNHENGGDEVRSKY 568
Query: 601 SGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSVDYPSVDVNDTKLC 660
S RYTS+ADL+KLS A+RI +EAEKQLRISKNQ+TW TVALLQLSS DYPS D + KL
Sbjct: 569 SSRYTSKADLRKLSHALRIFTEAEKQLRISKNQSTWFTVALLQLSSADYPSTDADGNKLS 628
Query: 661 L--------REQSMEHLATGQCGDKSYRLGVQEDHKGTLDAIWYKATEICQSGQLKTFLR 712
L ++MEH G C +KS+RL QEDH+GTLDAIWYKAT ICQS +LKTFLR
Sbjct: 629 LGGACNGDELGKNMEHFDAGSCENKSFRLVAQEDHEGTLDAIWYKATGICQSSKLKTFLR 688
Query: 713 KKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFILGCNIELRITYEP 772
+KGKLSSL VD+STS LAI ELEF RHHVSKAEKSWKLIASSLQ +LGCNIELRI P
Sbjct: 689 RKGKLSSLLVDQSTSSLAIVELEFGRRHHVSKAEKSWKLIASSLQCLLGCNIELRIIDVP 748
Query: 773 RASDSKYAKLKXXXXXXXXXXXXAQQKSLSSNGSESDYADHVSQNPMIKDKTLTSS---- 828
++ + K QQ S + SE DYAD+ S+NP++K+KTL+ S
Sbjct: 749 LSTSNSP---KRSSFNIFSCSRRIQQTS-NEQESEIDYADYTSENPIMKNKTLSCSSSYC 804
Query: 829 --------DYHGMDVVTTLRSCKGNLLSSGERFLNRSFQENMGTSCSEVDSSKEKGNRCA 880
Y+ D V++LRSC+GNLLSS E FLN S E MG SCS VDSSKE+G+
Sbjct: 805 GSQIPPQNSYNETDPVSSLRSCEGNLLSSREIFLNTSMHEIMGASCSGVDSSKEEGHNGV 864
Query: 881 HLVPSVLESDYQSNCFPQNLWLQKKFRSSYSSKSTLQGI 919
HLVPS+ SD +SNCFPQ+LW QKKFRSSYSS + QGI
Sbjct: 865 HLVPSLPNSDNRSNCFPQSLWFQKKFRSSYSSNLSFQGI 903
>Medtr4g104350.1 | DNA polymerase III subunit gamma/tau | HC |
chr4:43113306-43108849 | 20130731
Length = 935
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/947 (59%), Positives = 676/947 (71%), Gaps = 60/947 (6%)
Query: 1 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFPEA 60
MDGRRHSVD+PISKTLVALRRVRSLRDPSTN I K S LIDN WENG ISL F A
Sbjct: 1 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLIDNEHWENG----ISLRFVNA 56
Query: 61 SRECDSDDNVDFTSRNLGFKGQRVQD---ATDFKLDCGLLGSRLKPSGMSFQDSQHNDDE 117
+ C+SDDN S++L FKG+R D T+F++ C + M++ D Q DDE
Sbjct: 57 TYVCESDDNGCLRSKDLDFKGRREHDIDSTTNFEMGCHM---------MNYCDKQQQDDE 107
Query: 118 LVYSNPNRQCXXXXXXXXXXXXXNHGGEGLDLASIEPHSNNFRDGESCFIATAKSSQLGR 177
LVYSNP +Q NH GLDLASI P SN+ +D ESC++++ SS+LGR
Sbjct: 108 LVYSNPKQQGDFGNKSPKESCCSNHEAVGLDLASIIPSSNHLKDKESCYLSSQLSSRLGR 167
Query: 178 IDHSRSDKKSLRANQVRPAQVEGGIVNHVGNPCLSVHDDFSPHSTSVDINQDFDVLDNND 237
ID+ +S +K L+ NQ +P ++ + V +PCLS S QD DVL +
Sbjct: 168 IDYKKSTRKLLQKNQAKPFELMQDNASSVDSPCLSA---------STQTPQDVDVLVDY- 217
Query: 238 NGCGISFCWSKSPRFRESNLYSKIEDRPLILHQVDDTDLHGDRNMRHD-GGDISPTLETP 296
NGCGIS CWSKSPRFR++N YS++ED PL+L V++TDLHG ++MRH G +ISPTLETP
Sbjct: 218 NGCGISCCWSKSPRFRDANYYSEMEDLPLMLQHVNETDLHGQKSMRHIIGSEISPTLETP 277
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
RSLSMKFRP SF+DLVGQN+V +SL GAISRG IASFYLFHGPRGTGKTSASRIFAAALN
Sbjct: 278 RSLSMKFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALN 337
Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNAC-IPPISSRFKV 415
C+S+E ++PCGLC ECVLFFSGRSK+VKEVDS+RINR D+ KSLVKNAC P SSR+KV
Sbjct: 338 CISLEERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNACTTAPFSSRYKV 397
Query: 416 FIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDAD 475
FIIDECQLL ETWA+L N+L S+HVVFVMITPDL+KLPRSA+SRAQ YHF K+KDAD
Sbjct: 398 FIIDECQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDAD 457
Query: 476 IACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXVHELTGI 535
IA RL++ICVEEGL+ +Q ALDFIAAKSCGS+RDAEMMLDQ V+ELTG+
Sbjct: 458 IASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGV 517
Query: 536 VXXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSE 595
+ NTVIRAREL+RSRI PLQL+SQLANLIMDILAGKC GSE
Sbjct: 518 ISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELTGSE 577
Query: 596 VRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSVDYPSVDVN 655
+R +FS R+ SE+ +QKLS A+RILSE EKQLRISKNQTTW T ALLQLSS++Y SVD N
Sbjct: 578 IRRRFSDRHISESSMQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSLEYSSVDAN 637
Query: 656 DTKLCLR---------------EQSMEHLATGQCGDKSYRLGVQEDHKGTLDAIWYKATE 700
D+KLC+R +S++HLATG+C +KSY++ VQ+D K TLD IWYKATE
Sbjct: 638 DSKLCIRAASNRDGDLCSTSSTAESLKHLATGKCAEKSYKIEVQDDDKATLDCIWYKATE 697
Query: 701 ICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFIL 760
IC+S +LK FLRK+GKLSS+ +++ LA ELEF HR +V++AEKSWK IASSLQFIL
Sbjct: 698 ICESKRLKAFLRKQGKLSSVCINQG---LAAVELEFHHRVYVARAEKSWKQIASSLQFIL 754
Query: 761 GCNIELRITYEPRASDSKYAKLKXXXXXXXXXXXXAQQKSLSSN--GSESDYADHVSQNP 818
GCNIELRI + P +DSKYA+LK +KSLSS+ G ESDYAD SQ P
Sbjct: 755 GCNIELRINHVPCTTDSKYARLKRSSFNFFNCSRRILRKSLSSDEQGCESDYADCTSQKP 814
Query: 819 MIKDKTLT-SSD----------YHGMDVVTTLRSCKGNLLSSGERFLNRSFQENMGTSCS 867
M+ D+TL+ SSD YHGM++VTTLRSC+GNLLSSG+ LNR QE S S
Sbjct: 815 MMMDRTLSRSSDCGSRVPPLESYHGMELVTTLRSCEGNLLSSGKIILNRIDQETPRISFS 874
Query: 868 EVDSSKEKGNRCAHLVPSVLE-SDYQSNCFPQNLWLQKKFRSSYSSK 913
DS KE+ L S + + SNCFP+ LWL KK SSY+SK
Sbjct: 875 RDDSVKEEECNYEDLASSTADLENTHSNCFPRTLWLHKKLSSSYASK 921
>Medtr4g104350.2 | DNA polymerase III subunit gamma/tau | HC |
chr4:43113918-43109005 | 20130731
Length = 936
Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/948 (59%), Positives = 676/948 (71%), Gaps = 61/948 (6%)
Query: 1 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFPEA 60
MDGRRHSVD+PISKTLVALRRVRSLRDPSTN I K S LIDN WENG ISL F A
Sbjct: 1 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLIDNEHWENG----ISLRFVNA 56
Query: 61 SRECDSDDNVDFTSRNLGFKGQRVQD---ATDFKLDCGLLGSRLKPSGMSFQDSQHNDDE 117
+ C+SDDN S++L FKG+R D T+F++ C + M++ D Q DDE
Sbjct: 57 TYVCESDDNGCLRSKDLDFKGRREHDIDSTTNFEMGCHM---------MNYCDKQQQDDE 107
Query: 118 LVYSNPNRQCXXXXXXXXXXXXXNHGGEGLDLASIEPHSNNFRDGESCFIATAKSSQLGR 177
LVYSNP +Q NH GLDLASI P SN+ +D ESC++++ SS+LGR
Sbjct: 108 LVYSNPKQQGDFGNKSPKESCCSNHEAVGLDLASIIPSSNHLKDKESCYLSSQLSSRLGR 167
Query: 178 IDHSRSDKKSLRANQVRPAQVEGGIVNHVGNPCLSVHDDFSPHSTSVDINQDFDVLDNND 237
ID+ +S +K L+ NQ +P ++ + V +PCLS S QD DVL +
Sbjct: 168 IDYKKSTRKLLQKNQAKPFELMQDNASSVDSPCLSA---------STQTPQDVDVLVDY- 217
Query: 238 NGCGISFCWSKSPRFRESNLYSKIEDRPLILHQVDDTDLHGDRNMRHD-GGDISPTLETP 296
NGCGIS CWSKSPRFR++N YS++ED PL+L V++TDLHG ++MRH G +ISPTLETP
Sbjct: 218 NGCGISCCWSKSPRFRDANYYSEMEDLPLMLQHVNETDLHGQKSMRHIIGSEISPTLETP 277
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
RSLSMKFRP SF+DLVGQN+V +SL GAISRG IASFYLFHGPRGTGKTSASRIFAAALN
Sbjct: 278 RSLSMKFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALN 337
Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNAC-IPPISSRFKV 415
C+S+E ++PCGLC ECVLFFSGRSK+VKEVDS+RINR D+ KSLVKNAC P SSR+KV
Sbjct: 338 CISLEERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNACTTAPFSSRYKV 397
Query: 416 FIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDAD 475
FIIDECQLL ETWA+L N+L S+HVVFVMITPDL+KLPRSA+SRAQ YHF K+KDAD
Sbjct: 398 FIIDECQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDAD 457
Query: 476 IACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXVHELTGI 535
IA RL++ICVEEGL+ +Q ALDFIAAKSCGS+RDAEMMLDQ V+ELTG+
Sbjct: 458 IASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGV 517
Query: 536 VXXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSE 595
+ NTVIRAREL+RSRI PLQL+SQLANLIMDILAGKC GSE
Sbjct: 518 ISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELTGSE 577
Query: 596 VRSKFSGRYT-SEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSVDYPSVDV 654
+R +FS R+ +E+ +QKLS A+RILSE EKQLRISKNQTTW T ALLQLSS++Y SVD
Sbjct: 578 IRRRFSDRHILAESSMQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSLEYSSVDA 637
Query: 655 NDTKLCLR---------------EQSMEHLATGQCGDKSYRLGVQEDHKGTLDAIWYKAT 699
ND+KLC+R +S++HLATG+C +KSY++ VQ+D K TLD IWYKAT
Sbjct: 638 NDSKLCIRAASNRDGDLCSTSSTAESLKHLATGKCAEKSYKIEVQDDDKATLDCIWYKAT 697
Query: 700 EICQSGQLKTFLRKKGKLSSLHVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFI 759
EIC+S +LK FLRK+GKLSS+ +++ LA ELEF HR +V++AEKSWK IASSLQFI
Sbjct: 698 EICESKRLKAFLRKQGKLSSVCINQG---LAAVELEFHHRVYVARAEKSWKQIASSLQFI 754
Query: 760 LGCNIELRITYEPRASDSKYAKLKXXXXXXXXXXXXAQQKSLSSN--GSESDYADHVSQN 817
LGCNIELRI + P +DSKYA+LK +KSLSS+ G ESDYAD SQ
Sbjct: 755 LGCNIELRINHVPCTTDSKYARLKRSSFNFFNCSRRILRKSLSSDEQGCESDYADCTSQK 814
Query: 818 PMIKDKTLT-SSD----------YHGMDVVTTLRSCKGNLLSSGERFLNRSFQENMGTSC 866
PM+ D+TL+ SSD YHGM++VTTLRSC+GNLLSSG+ LNR QE S
Sbjct: 815 PMMMDRTLSRSSDCGSRVPPLESYHGMELVTTLRSCEGNLLSSGKIILNRIDQETPRISF 874
Query: 867 SEVDSSKEKGNRCAHLVPSVLE-SDYQSNCFPQNLWLQKKFRSSYSSK 913
S DS KE+ L S + + SNCFP+ LWL KK SSY+SK
Sbjct: 875 SRDDSVKEEECNYEDLASSTADLENTHSNCFPRTLWLHKKLSSSYASK 922
>Medtr3g075260.2 | DNA polymerase III subunit gamma/tau | HC |
chr3:34261100-34257458 | 20130731
Length = 653
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/661 (63%), Positives = 486/661 (73%), Gaps = 34/661 (5%)
Query: 1 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFPEA 60
MDGRRHSVD+PISK LVALRRVRSL+DPSTNS+ S LIDN+ WEN +GNG SL+FP+A
Sbjct: 3 MDGRRHSVDLPISKALVALRRVRSLKDPSTNSVTNHSPLIDNLHWENSTGNG-SLMFPDA 61
Query: 61 SRECDSDDNVDFTSRNLGFKGQRVQDATDFKLDCGLLGSRLKPSGMSFQDSQHNDDELVY 120
DSDDN+ +SR+LGFKG R DAT +L GLL SR
Sbjct: 62 ---FDSDDNLA-SSRHLGFKGGRELDATSLELSHGLLNSR-------------------- 97
Query: 121 SNPNRQCXXXXXXXXXXXXXNHGGEGLDLASIEPHSNNFRDGESCFIATAKSSQLGRIDH 180
PNR+ NHGG+GLD+ N+F+DG + +SS+LGR+DH
Sbjct: 98 --PNRRSVYGNKSPSESCGSNHGGKGLDI-------NDFKDGGLYYREIGRSSKLGRMDH 148
Query: 181 SRSDKKSLRANQVRPAQVEGGIVNHVGNPCLSVHDDFSPHSTSVDINQDFDVLDNNDNGC 240
++ +K LR NQV+P+ V G I +++ PC V + SP + +N+DF VLDN +NGC
Sbjct: 149 AKPARKLLRKNQVKPSDVVGDIASNLSTPCPCVRNALSPQGSLALVNKDFGVLDNRENGC 208
Query: 241 GISFCWSKSPRFRESNLYSKIEDRPLILHQVDDTDLHGDRNMRHDGGDISPTLETPRSLS 300
G + C S SPRFRESNL + EDR LIL+ VDDTDLHG RN+R +GG+ SP LETPR LS
Sbjct: 209 GKNCCLSNSPRFRESNLCFEKEDRSLILNCVDDTDLHGHRNVRDNGGESSPNLETPRMLS 268
Query: 301 MKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSV 360
MKFRP SF DLVGQ++VVRSLL A+S I SFYLFHGPRGTGKTSAS+IFA ALNC+S
Sbjct: 269 MKFRPLSFDDLVGQDMVVRSLLAALSSRRITSFYLFHGPRGTGKTSASKIFACALNCISN 328
Query: 361 EGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVFIIDE 420
+ Q+PCGLCRECVLFFSGRSK+VKEVDSVRIN TDQVKSLVKNAC PP+SSRFKVFIIDE
Sbjct: 329 KKQRPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVKNACTPPVSSRFKVFIIDE 388
Query: 421 CQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRL 480
CQLL ETWA LSNN +N+S+H VFVMIT DLDKLP+SAVSRAQ Y+FPKV+DA+IAC+L
Sbjct: 389 CQLLNPETWACLSNNQDNISQHAVFVMITTDLDKLPQSAVSRAQKYYFPKVQDANIACKL 448
Query: 481 EKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXVHELTGIVXXXX 540
EKIC EEGLDF+QAALD IAA+SCGSVRDAE+MLDQ V+ELTGIV
Sbjct: 449 EKICTEEGLDFEQAALDLIAARSCGSVRDAEIMLDQLSLLGKKIKISLVYELTGIVSDDE 508
Query: 541 XXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEVRSKF 600
NTVIRARELMRSRI PLQLVSQL NLIMDILAG +GG EVRSK+
Sbjct: 509 LLDLLDLALSPDTSNTVIRARELMRSRIDPLQLVSQLVNLIMDILAGNHENGGDEVRSKY 568
Query: 601 SGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSVDYPSVDVNDTKLC 660
S RYTS+ADL+KLS A+RI +EAEKQLRISKNQ+TW TVALLQLSS DYPS D + KL
Sbjct: 569 SSRYTSKADLRKLSHALRIFTEAEKQLRISKNQSTWFTVALLQLSSADYPSTDADGNKLS 628
Query: 661 L 661
L
Sbjct: 629 L 629
>Medtr4g134530.1 | DNA polymerase III subunit gamma/tau | HC |
chr4:56342192-56348822 | 20130731
Length = 1203
Score = 302 bits (774), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 213/351 (60%), Gaps = 6/351 (1%)
Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
K++P F +L+GQ +VV SL+ A+SRG IA YLF GPRGTGKTS +RIFAAALNC++ +
Sbjct: 430 KYKPLFFGELIGQTIVVHSLVNAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASD 489
Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKN---ACIPPISSRFKVFII 418
KPCG C EC F SG+S ++ EVD D+ + L+K SSR+ VF+I
Sbjct: 490 EGKPCGYCGECADFVSGKSCDLVEVDGTNKKGIDKARYLLKRLAAGSSSAASSRYTVFVI 549
Query: 419 DECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIAC 478
DEC LL ++TW LE + VVF+ IT DLD +PR+ SR Q Y F K+KD DI
Sbjct: 550 DECHLLTSKTWLGFLKFLEAPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVT 609
Query: 479 RLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXVHELTGIVXX 538
RL KI +E LD + ALD IA + GS+RDAE ML+Q V+EL G+V
Sbjct: 610 RLRKISTQENLDVETDALDLIALNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSD 669
Query: 539 XXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGK--CVDGGSEV 596
TV R+RELM S + P+ L+SQLA LIMDI+AG VD +
Sbjct: 670 EKLLELLELAMSSDTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPD- 728
Query: 597 RSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLSSV 647
S F GR +E +L++L A+++LSEAEKQLR S ++TW T LLQL SV
Sbjct: 729 GSFFGGRSLNETELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSV 779
>Medtr2g017980.1 | DNA polymerase III subunit gamma/tau | HC |
chr2:5258656-5265014 | 20130731
Length = 1177
Score = 286 bits (731), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 180/529 (34%), Positives = 261/529 (49%), Gaps = 58/529 (10%)
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
+SL+ K+ P +F D+VGQN+V ++L A+SR + Y+F+GP GTGKTS +RIFA ALN
Sbjct: 463 QSLTQKYIPRTFRDMVGQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALN 522
Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVF 416
C S E KPCG C C+ G+S+ ++EV V + + L+ N + + S+++VF
Sbjct: 523 CSSSEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPSQYRVF 582
Query: 417 IIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADI 476
I D+C L A+ W ++S ++ VVF++++ LD LP +SR Q + FPK+KD+DI
Sbjct: 583 IFDDCDSLSADCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDI 642
Query: 477 ACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXVHELTGIV 536
L I +EGLD D+ AL IA++S GS+RDAEM L+Q V EL G++
Sbjct: 643 VYTLHGIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 702
Query: 537 XXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEV 596
NTV R +M + + PL L+SQLA +I DILAG
Sbjct: 703 SDEKLVDLLDLALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERC 762
Query: 597 RSKFSGRYT-SEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLS---------- 645
R KF R S+ D++KL +A++ LSEAEKQLR+S ++ TWLT ALLQL+
Sbjct: 763 RRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTS 822
Query: 646 ----------------------SVDYPSVDVNDTKLCLREQSMEHLATGQCGDKSYRL-G 682
+ P +N T+ + ME G D+ + L G
Sbjct: 823 SDNSFNHSPFALNNGNVKEATRNTGNPVEILNRTRRMSMDARMESSNAGSSADRRHSLSG 882
Query: 683 VQEDH--------------------KGTLDAIWYKATEICQSGQLKTFLRKKGKLSSLHV 722
H + +D IW + E LK FL K GKL +
Sbjct: 883 YAPQHTYSHSTDKTRINERQTSDRNRKEIDEIWLEVLERIHYPGLKEFLYKAGKLIFI-- 940
Query: 723 DRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFILGCNIELRITYE 771
S +L F + S AEK I + + +LG ++ + I E
Sbjct: 941 --SFGAAPTVQLMFNSQLSKSTAEKFTGHILQAFESVLGSSVTIEIRCE 987
>Medtr2g017980.2 | DNA polymerase III subunit gamma/tau | HC |
chr2:5258652-5265014 | 20130731
Length = 1177
Score = 286 bits (731), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 180/529 (34%), Positives = 261/529 (49%), Gaps = 58/529 (10%)
Query: 297 RSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALN 356
+SL+ K+ P +F D+VGQN+V ++L A+SR + Y+F+GP GTGKTS +RIFA ALN
Sbjct: 463 QSLTQKYIPRTFRDMVGQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALN 522
Query: 357 CLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLVKNACIPPISSRFKVF 416
C S E KPCG C C+ G+S+ ++EV V + + L+ N + + S+++VF
Sbjct: 523 CSSSEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPSQYRVF 582
Query: 417 IIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADI 476
I D+C L A+ W ++S ++ VVF++++ LD LP +SR Q + FPK+KD+DI
Sbjct: 583 IFDDCDSLSADCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDI 642
Query: 477 ACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQXXXXXXXXXXXXVHELTGIV 536
L I +EGLD D+ AL IA++S GS+RDAEM L+Q V EL G++
Sbjct: 643 VYTLHGIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI 702
Query: 537 XXXXXXXXXXXXXXXXXXNTVIRARELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEV 596
NTV R +M + + PL L+SQLA +I DILAG
Sbjct: 703 SDEKLVDLLDLALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERC 762
Query: 597 RSKFSGRYT-SEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVALLQLS---------- 645
R KF R S+ D++KL +A++ LSEAEKQLR+S ++ TWLT ALLQL+
Sbjct: 763 RRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTS 822
Query: 646 ----------------------SVDYPSVDVNDTKLCLREQSMEHLATGQCGDKSYRL-G 682
+ P +N T+ + ME G D+ + L G
Sbjct: 823 SDNSFNHSPFALNNGNVKEATRNTGNPVEILNRTRRMSMDARMESSNAGSSADRRHSLSG 882
Query: 683 VQEDH--------------------KGTLDAIWYKATEICQSGQLKTFLRKKGKLSSLHV 722
H + +D IW + E LK FL K GKL +
Sbjct: 883 YAPQHTYSHSTDKTRINERQTSDRNRKEIDEIWLEVLERIHYPGLKEFLYKAGKLIFI-- 940
Query: 723 DRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFILGCNIELRITYE 771
S +L F + S AEK I + + +LG ++ + I E
Sbjct: 941 --SFGAAPTVQLMFNSQLSKSTAEKFTGHILQAFESVLGSSVTIEIRCE 987
>Medtr3g088380.1 | replication factor C subunit 2 | HC |
chr3:40162477-40157119 | 20130731
Length = 339
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 95/234 (40%), Gaps = 33/234 (14%)
Query: 289 ISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSAS 348
++P +++ + K+RP D+ Q VVR L + G LF+GP GTGKT+ +
Sbjct: 1 MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHM-LFYGPPGTGKTTTA 59
Query: 349 RIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRIN--RTDQVKSLVKNAC- 405
A A E + R E+ D IN RT ++K A
Sbjct: 60 --LAIAHQLFGPE-------------LYKSRVLELNASDDRGINVVRT-KIKDFAAVAVG 103
Query: 406 ---------IPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLP 456
PP +K+ ++DE + + +L +E S+ F I + ++
Sbjct: 104 TNKPKNGYPCPP----YKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 159
Query: 457 RSAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDA 510
SR + F + + ++ R+ IC EEG+ D L ++ S G +R A
Sbjct: 160 EPLASRCAKFRFKPLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRA 213
>Medtr3g088380.2 | replication factor C subunit 2 | HC |
chr3:40162519-40157119 | 20130731
Length = 339
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 95/234 (40%), Gaps = 33/234 (14%)
Query: 289 ISPTLETPRSLSMKFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSAS 348
++P +++ + K+RP D+ Q VVR L + G LF+GP GTGKT+ +
Sbjct: 1 MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHM-LFYGPPGTGKTTTA 59
Query: 349 RIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRIN--RTDQVKSLVKNAC- 405
A A E + R E+ D IN RT ++K A
Sbjct: 60 --LAIAHQLFGPE-------------LYKSRVLELNASDDRGINVVRT-KIKDFAAVAVG 103
Query: 406 ---------IPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLP 456
PP +K+ ++DE + + +L +E S+ F I + ++
Sbjct: 104 TNKPKNGYPCPP----YKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 159
Query: 457 RSAVSRAQTYHFPKVKDADIACRLEKICVEEGLDFDQAALDFIAAKSCGSVRDA 510
SR + F + + ++ R+ IC EEG+ D L ++ S G +R A
Sbjct: 160 EPLASRCAKFRFKPLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRA 213
>Medtr4g102860.1 | replication factor C subunit 2 | HC |
chr4:42642450-42637960 | 20130731
Length = 333
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 19/208 (9%)
Query: 302 KFRPNSFSDLVGQNVVVRSLLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVE 361
K+RP+ D+VG V S L I+R + GP GTGKT++ I A A L
Sbjct: 20 KYRPSKVVDIVGNEDAV-SRLQVIARDGNMPNLILSGPPGTGKTTS--ILALAHELLGPN 76
Query: 362 GQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSLV-KNACIPPISSRFKVFIIDE 420
RE VL + + + + +D VR +++K K +PP R KV I+DE
Sbjct: 77 -------YREAVLELN--ASDDRGIDVVR----NKIKMFAQKKVTLPP--GRHKVVILDE 121
Query: 421 CQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRL 480
+ + +L +E S F + K+ SR F ++ D +I RL
Sbjct: 122 ADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRL 181
Query: 481 EKICVEEGLDFDQAALDFIAAKSCGSVR 508
+ E + + L+ I + G +R
Sbjct: 182 MVVVQAEKVPYVPEGLEAIIFTADGDMR 209