Miyakogusa Predicted Gene
- Lj1g3v0294720.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0294720.2 Non Characterized Hit- tr|G7IJ51|G7IJ51_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,52.08,0.00000000000003,RNAse_H_YqgF: RNAse H domain protein,
YqgF family,Resolvase, holliday junction-type, YqgF-like;
Ribo,CUFF.25517.2
(199 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g027430.1 | holliday junction resolvase-like protein | HC ... 252 2e-67
Medtr2g064690.1 | holliday junction resolvase-like protein | HC ... 144 8e-35
Medtr2g064700.1 | hypothetical protein | HC | chr2:29286402-2928... 81 7e-16
Medtr2g064670.1 | hypothetical protein | LC | chr2:29305267-2930... 60 2e-09
>Medtr4g027430.1 | holliday junction resolvase-like protein | HC |
chr4:9512166-9507210 | 20130731
Length = 231
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/177 (70%), Positives = 151/177 (85%), Gaps = 13/177 (7%)
Query: 29 SFVKLCPTQNAKSHYNRVKPISLDEFPPNALRR------RGGFTLGVDLGMARTGIAISK 82
S KL TQN K+ P++L+E PPNALRR RGGF+LGVDLGMARTGIA+SK
Sbjct: 30 SLSKLNSTQNLKT------PLTLEELPPNALRRKKDAEWRGGFSLGVDLGMARTGIALSK 83
Query: 83 GFNFRPVTVLELRGQKLEVQMINIAEQEEADEFVIGLPRSFDGKETPQSNIVRTVAGRLA 142
GF FRP+TVL+LRGQKLEV+++NIAE+EEADEF+IGLP+S DG+ET QSNIVR+VAGRLA
Sbjct: 84 GFTFRPLTVLKLRGQKLEVRIMNIAEEEEADEFIIGLPKSSDGEETIQSNIVRSVAGRLA 143
Query: 143 IRAAERGWRVYLQDEHGTTTEAVNRMVNMGLSKSSQQRKLDAYAAMMVLERYFSTSG 199
IRAAERGWRVYL DE+GTT A++RM+NMG+++ SQQ+K DAYAA+M+LERYFSTSG
Sbjct: 144 IRAAERGWRVYLHDEYGTTNAAIDRMINMGVNR-SQQKKQDAYAAVMLLERYFSTSG 199
>Medtr2g064690.1 | holliday junction resolvase-like protein | HC |
chr2:29288077-29290315 | 20130731
Length = 129
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/98 (71%), Positives = 86/98 (87%), Gaps = 3/98 (3%)
Query: 104 INIAEQEEADEFVIGLPRSFDGKETPQSNIVRTVAGRLAIRAAERGWRVYLQDEHGTTTE 163
+NIAE+EEADEF+IGL +S DG+ET QSNIVR+VAGRLAIRAAE GWRVYL DE+GTT
Sbjct: 1 MNIAEEEEADEFIIGLSKSSDGEETIQSNIVRSVAGRLAIRAAEWGWRVYLHDEYGTTNA 60
Query: 164 AVNRMVNMGLSKSSQQRKLDAYAAM--MVLERYFSTSG 199
A++RM+NMG+++ SQQ+K DAYA + M+LERYFSTSG
Sbjct: 61 AIDRMINMGVNR-SQQKKQDAYAVVISMLLERYFSTSG 97
>Medtr2g064700.1 | hypothetical protein | HC |
chr2:29286402-29286121 | 20130731
Length = 93
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 54/77 (70%), Gaps = 13/77 (16%)
Query: 22 PSVPKK-PSFVKLCPTQNAKSHYNRVKPISLDEFPPNALRR------RGGFTLGVDLGMA 74
PS+ K S KL TQN K+ P++L+E PPNALRR RGGF+LGVDLGMA
Sbjct: 14 PSIHAKIQSLSKLNSTQNLKT------PLTLEELPPNALRRKKDEEWRGGFSLGVDLGMA 67
Query: 75 RTGIAISKGFNFRPVTV 91
RTGIA+SKGF FRP+TV
Sbjct: 68 RTGIALSKGFTFRPLTV 84
>Medtr2g064670.1 | hypothetical protein | LC |
chr2:29305267-29305518 | 20130731
Length = 83
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 12/60 (20%)
Query: 29 SFVKLCPTQNAKSHYNRVKPISLDEFPPNALRR------RGGFTLGVDLGMARTGIAISK 82
S KL TQ+ K+ ++L+E PPNALRR RGGF+LGVDLGMARTGIA++K
Sbjct: 30 SLSKLNSTQSLKT------ALTLEELPPNALRRKKDAEWRGGFSLGVDLGMARTGIALNK 83