Miyakogusa Predicted Gene

Lj1g3v0250170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0250170.1 tr|G4T6V1|G4T6V1_PIRID Probable
COX12-cytochrome-c oxidase, subunit VIB OS=Piriformospora indica
(st,46.51,4e-19,Q8LCP1_ARATH_Q8LCP1;,NULL; CYTOCHROME C OXIDASE
POLYPEPTIDE VIB,NULL; COX6B,Cytochrome c oxidase, su,CUFF.25413.1
         (177 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g064600.1 | cytochrome C oxidase, subunit VIb family prote...   187   6e-48
Medtr4g129710.1 | cytochrome C oxidase, subunit VIb family prote...   142   2e-34
Medtr5g013865.1 | cytochrome C oxidase, subunit VIb family prote...    77   1e-14

>Medtr5g064600.1 | cytochrome C oxidase, subunit VIb family protein
           | HC | chr5:27135489-27141149 | 20130731
          Length = 183

 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 84/87 (96%), Positives = 84/87 (96%)

Query: 91  NSGDQEAAEETPEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDGAPECDKFAK 150
           NSGDQE AEE PEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCVAAKGD APECDKFAK
Sbjct: 97  NSGDQEEAEEKPEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDDAPECDKFAK 156

Query: 151 YYRALCPGEWVDRWNEQRENGTFPGPL 177
           YYRALCPGEWVDRWNEQRENGTFPGPL
Sbjct: 157 YYRALCPGEWVDRWNEQRENGTFPGPL 183


>Medtr4g129710.1 | cytochrome C oxidase, subunit VIb family protein
           | HC | chr4:54063655-54061553 | 20130731
          Length = 82

 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 70/74 (94%)

Query: 104 IKLETAPVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDGAPECDKFAKYYRALCPGEWVDR 163
           I+L+TAPVDFRFPTTNQTRHCFTRYIE+HRC+  KG+ + EC+KFAKYYR+LCPGEWVD+
Sbjct: 9   IELKTAPVDFRFPTTNQTRHCFTRYIEFHRCMTVKGENSGECEKFAKYYRSLCPGEWVDK 68

Query: 164 WNEQRENGTFPGPL 177
           WNEQR+NGTFPGPL
Sbjct: 69  WNEQRDNGTFPGPL 82


>Medtr5g013865.1 | cytochrome C oxidase, subunit VIb family protein
           | HC | chr5:4575237-4573623 | 20130731
          Length = 133

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 108 TAPVDFRFPTTN-QTRHCFTRYIEYHRCVAAKGDGAPECDKFAKYYRALCPGEWVDRWNE 166
           TA      P+ N QTRHC+ +Y+EY RC+  KG+ A EC+K   + R++CP +W+  W++
Sbjct: 63  TAENGSESPSNNYQTRHCYVKYVEYQRCIQQKGEKANECEKIGTHLRSMCPTKWISEWDQ 122

Query: 167 QRENGTFP 174
           +RE G FP
Sbjct: 123 EREEGRFP 130