Miyakogusa Predicted Gene

Lj1g3v0246830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0246830.1 Non Characterized Hit- tr|B8AQA9|B8AQA9_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,45.38,6e-18,PATTERN FORMATION PROTEIN,NULL; GUANYL-NUCLEOTIDE
EXCHANGE FACTOR,NULL; coiled-coil,NULL; seg,NULL,gene.g29068.t1.1
         (338 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g086260.1 | ARF guanine-nucleotide exchange factor GNOM pr...   575   e-164
Medtr3g068130.1 | pattern formation protein GNOM protein | HC | ...   192   5e-49
Medtr5g080650.1 | pattern formation protein GNOM protein | HC | ...   153   2e-37
Medtr3g068140.1 | pattern formation protein GNOM protein | HC | ...   128   8e-30

>Medtr6g086260.1 | ARF guanine-nucleotide exchange factor GNOM protein
            | HC | chr6:32377569-32372832 | 20130731
          Length = 1372

 Score =  575 bits (1481), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 279/338 (82%), Positives = 293/338 (86%), Gaps = 12/338 (3%)

Query: 1    MWKLDKEILDTCHDVISQSMSKIVIEYPANLQTQFGWKSVLNLLSVTWRHPETYDLGIEA 60
            MWKLDKEILD C+++I+Q MSKIVI+YPANLQTQ GWKSVLNLLSV WRHPETYDL IEA
Sbjct: 1047 MWKLDKEILDMCYEIIAQLMSKIVIQYPANLQTQVGWKSVLNLLSVAWRHPETYDLAIEA 1106

Query: 61   LITLLSDGTHVTKTNYAYCIDCAFGCFLAKNSPIEKKKKILDLLADSVKLLVQWHRTQYS 120
            LI+L SD T+VT+TNYAY IDCAFGCFLAKNSPIEKKKKILDLLADS  LLVQW RTQY+
Sbjct: 1107 LISLFSDATNVTRTNYAYLIDCAFGCFLAKNSPIEKKKKILDLLADSTNLLVQWQRTQYT 1166

Query: 121  DPGSNVXXXXXXXXXXMEDNSRGPGSANYNMNLFVKLGEAFRRTSLSRQEEIRNHAVYSL 180
            DPGSNV           EDN RGP SANYNMN             LSRQEEIRNHAVYSL
Sbjct: 1167 DPGSNVSVVSNTSSSSAEDNFRGPSSANYNMNF------------LSRQEEIRNHAVYSL 1214

Query: 181  HKSFNLAEELLYLSSNCINYFNLVIFAMVDELHEKMLEYSRRENAEREMRSMEGTLKLAM 240
            HKSFNLAEE+LY SSNCI+YFNLVIFAMVDELHEKMLEYSRR+NAEREMRSMEGTLKLAM
Sbjct: 1215 HKSFNLAEEMLYTSSNCISYFNLVIFAMVDELHEKMLEYSRRDNAEREMRSMEGTLKLAM 1274

Query: 241  ELLSDMYLNSLRQIAESPGFRTFWLGILRRMDTCMKADLGHYGPSSLSEIIPDLLKKIIT 300
            ELLS MYL SLRQI ESPGFR FWLG+LRRMDTCMKA+LGHYGPSSLSEIIPDLLKKIIT
Sbjct: 1275 ELLSAMYLQSLRQITESPGFRAFWLGVLRRMDTCMKAELGHYGPSSLSEIIPDLLKKIIT 1334

Query: 301  HMKDEGILAPKEDDDMWEITYIQIQWICPALKDELFPL 338
             MKDEGIL PKEDDDMWEITYIQIQWICP LKDELFPL
Sbjct: 1335 QMKDEGILEPKEDDDMWEITYIQIQWICPRLKDELFPL 1372


>Medtr3g068130.1 | pattern formation protein GNOM protein | HC |
            chr3:30759420-30752039 | 20130731
          Length = 1474

 Score =  192 bits (487), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 191/338 (56%), Gaps = 24/338 (7%)

Query: 3    KLDKEILDTCHDVISQSMSKIVIEYPANLQTQFGWKSVLNLLSVTWRHPETYDLGIEALI 62
            KLD  + D   + I+Q +S++V    +++++Q GW+++ +LLS+T RH E  + G +AL+
Sbjct: 1117 KLDARVADAYCEQITQEVSRLVKANASHIRSQLGWRAITSLLSITARHIEASEAGFDALL 1176

Query: 63   TLLSDGTHVTKTNYAYCIDCAFGCFLAKNSPIEKKKKILDLLADSVKLLVQWHRTQYSDP 122
             ++SDG H+   NY  C+D A     ++    E+  + LDL+  SV  L QW     +  
Sbjct: 1177 FIMSDGAHLLPANYVLCVDTARQFAESRVGQAERSVRALDLMTGSVNCLAQW-----TSE 1231

Query: 123  GSNVXXXXXXXXXXMEDNSRGPGSANYNMNLFVKLGEAFRRTSLSRQEEIRNHAVYSLHK 182
            G             MED      S +   ++++ LG+  R+  L ++EE+RNHA+ SL K
Sbjct: 1232 GKEA----------MEDEQMTKLSKDIG-DMWLILGQGLRKVCLDQREEVRNHALSSLQK 1280

Query: 183  SFNLAEELLYLSSNCINYFNLVIFAMVDELHEKMLEYSRRENAEREMRSMEGTLKLAMEL 242
                A+++       ++ F+LVIF ++D+L    LE S + +++++ R+MEGTL LA++L
Sbjct: 1281 CLIGADDIYLPYGKWLDCFDLVIFTVLDDL----LEIS-QGHSQKDYRNMEGTLILAVKL 1335

Query: 243  LSDMYLNSLRQIAESPGFRTFWLGILRRMDTCMKADLGHYGPSSLSEIIPDLLKKIITHM 302
            LS ++L SL  +++   F   WLG+L RM+  MK  +       L E +PDLLK  +  M
Sbjct: 1336 LSKVFLQSLPVLSQLTTFCKLWLGVLTRMEKYMKVKVRGKRSEKLQETVPDLLKNSLLAM 1395

Query: 303  KDEGILAPKE---DDDMWEITYIQIQWICPALKDELFP 337
            K  GILA +     D +WE+T++ +  I P+L+ E+FP
Sbjct: 1396 KMRGILAQRSALGGDSLWELTWLHVNNISPSLQLEVFP 1433


>Medtr5g080650.1 | pattern formation protein GNOM protein | HC |
            chr5:34512394-34520250 | 20130731
          Length = 1465

 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 182/339 (53%), Gaps = 26/339 (7%)

Query: 3    KLDKEILDTCHDVISQSMSKIVIEYPANLQTQFGWKSVLNLLSVTWRHPETYDLGIEALI 62
            KLD  + DT ++ I+Q +S +V    +++++Q GW+++ +LLS+T RH E+ + G +AL 
Sbjct: 1114 KLDARVADTYYEQITQEVSNLVKANASHIRSQLGWRTITSLLSITARHLESSEAGFDALF 1173

Query: 63   TLLSDGTHVTKTNYAYCIDCAFGCFLAKNSPIEKKKKILDLLADSVKLLVQWHRTQYSDP 122
             ++SDG H+  +N+A C+D A     ++   +E+    LDL+A S+    +W     +D 
Sbjct: 1174 FIMSDGAHILPSNFALCVDAAKQFAESRVGQVERSVVALDLMAGSINCFEKW----ANDA 1229

Query: 123  GSNVXXXXXXXXXXMEDNSRGPGSANYNMNLFVKLGEAFRRTSLSRQEEIRNHAVYSLHK 182
                          +ED             ++++L +  ++  + ++EE+RNHA+ SL  
Sbjct: 1230 KQATTEEMAKMLQNIED-------------MWLRLVQGLKKLCMDQREEVRNHALLSLQN 1276

Query: 183  SFNLAEELLYLSSNCINYFNLVIFAMVDELHEKMLEYSRRENAEREMRSMEGTLKLAMEL 242
                +  +       +  F+ VIF ++D+L E     S + ++ ++ R+MEGTL LA++L
Sbjct: 1277 CLTASVGIHLPHDLWLQCFDQVIFTVLDDLLE-----SSQTHSPKDYRNMEGTLILALKL 1331

Query: 243  LSDMYLNSLRQIAESPGFRTFWLGILRRMDTCMKADLGHYGPSSLSEIIPDLLKKIITHM 302
            LS ++L  L+ +++S  F   WL +L R +  MK  +         E++P+L+K  +  M
Sbjct: 1332 LSKVFLLLLQDLSQSTDFSKLWLNVLNRFEIFMKVKIRGRRSEKFQELVPELMKNTLLVM 1391

Query: 303  KDEGIL----APKEDDDMWEITYIQIQWICPALKDELFP 337
            K   +L    +  ++  +WE+T++ I  I P+L+ E+FP
Sbjct: 1392 KASHVLEQSSSSGDEKSLWELTWVHINNIAPSLQSEVFP 1430


>Medtr3g068140.1 | pattern formation protein GNOM protein | HC |
            chr3:30775252-30768570 | 20130731
          Length = 1473

 Score =  128 bits (321), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 167/340 (49%), Gaps = 25/340 (7%)

Query: 1    MWKLDKEILDTCHDVISQSMSKIVIEYPANLQTQFGWKSVLNLLSVTWRHPETYDLGIEA 60
            + KLD  + D  +D I+Q +S++V    + +++  GW+++ +LLSVT RH E  ++G + 
Sbjct: 1114 ILKLDALVADVYYDQITQEVSRLVKANASRIRSHIGWRTITSLLSVTARHLEASEVGFDT 1173

Query: 61   LITLLSDGTHVTKTNYAYCIDCAFGCFLAKNSPIEKKKKILDLLADSVKLLVQWHRTQYS 120
            L  ++SDG ++   NY  CID A     ++   +++    LDL+  S   L +W     S
Sbjct: 1174 LSFIMSDGNYLLPANYILCIDAARQFAESRVGLVDRSIGSLDLMVGSFNCLQKW----TS 1229

Query: 121  DPGSNVXXXXXXXXXXMEDNSRGPGSANYNMNLFVKLGEAFRRTSLSRQEEIRNHAVYSL 180
            D  +            ++D             ++++L +  R+  L ++EE+RNHA+ SL
Sbjct: 1230 D--AKQAAKEEEVAKMLQDIGE----------MWLRLVQGLRKVCLDQREEVRNHALLSL 1277

Query: 181  HKSFNLAEELLYLSSNCINYFNLVIFAMVDELHEKMLEYSRRENAEREMRSMEGTLKLA- 239
             K    A +        +  F+ VIF ++D+L    L+ S +E ++++ R++E TL LA 
Sbjct: 1278 QKCMTEAGKTHLPGDLWLQCFDQVIFTLLDDL----LDIS-QERSQKDYRNIEETLTLAL 1332

Query: 240  MELLSDMYLNSLRQIAESPGFRTFWLGILRRMDTCMKADLGHYGPSSLSEIIPDLLKKII 299
              L     L           F   W+G+L   +  MK  +       L   +P+LLK  +
Sbjct: 1333 KLLFKVFLLLLQELSQLEEAFCKLWVGVLSHAEKYMKVKVRGKRSEMLQLPVPELLKNAL 1392

Query: 300  THMKDEGILAPKE---DDDMWEITYIQIQWICPALKDELF 336
              MK  GIL       + ++WE+T++ ++ I P+L+ E+F
Sbjct: 1393 VVMKSGGILVESSGLAESNLWELTWLHMKNIAPSLQSEVF 1432