Miyakogusa Predicted Gene

Lj1g3v0246790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0246790.1 tr|A9SK71|A9SK71_PHYPA Qc-SNARE, plant
SFT1-family OS=Physcomitrella patens subsp. patens GN=SFT1
PE,48.04,2e-19,T_SNARE,Target SNARE coiled-coil domain; SNARE,Target
SNARE coiled-coil domain; no
description,NULL;,NODE_53512_length_859_cov_76.688011.path2.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g065550.1 | target SNARE coiled-coil protein | HC | chr5:2...   253   3e-68
Medtr3g099773.1 | target SNARE coiled-coil protein | HC | chr3:4...   213   4e-56

>Medtr5g065550.1 | target SNARE coiled-coil protein | HC |
           chr5:27570044-27567643 | 20130731
          Length = 132

 Score =  253 bits (647), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/132 (89%), Positives = 125/132 (94%)

Query: 1   MAANSQRPGSFYGGAAPYRSSDGLSTRPGAASEEIQLRIDPMDLDDELTGLHSQVRRLKN 60
           MAANS R  S YGGA P+RSSDGLSTRPGAAS+EIQLRIDPMDLDDELTGLH+QVRRLKN
Sbjct: 1   MAANSHRAASSYGGAVPFRSSDGLSTRPGAASDEIQLRIDPMDLDDELTGLHTQVRRLKN 60

Query: 61  VAQEIGTEVKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVILFALVCF 120
           VA+EIGTE+KYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVI FAL+CF
Sbjct: 61  VAEEIGTEMKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVICFALICF 120

Query: 121 FIVYLWSKMSRK 132
           F+VY WSKMSRK
Sbjct: 121 FVVYFWSKMSRK 132


>Medtr3g099773.1 | target SNARE coiled-coil protein | HC |
           chr3:45757679-45755053 | 20130731
          Length = 133

 Score =  213 bits (542), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 102/132 (77%), Positives = 119/132 (90%), Gaps = 2/132 (1%)

Query: 3   ANSQRPGSFYGGAAPYRSSDGLSTR-PGAASEEIQLRIDPM-DLDDELTGLHSQVRRLKN 60
           +NS R GSFYG AAP+RS +GLSTR P A+S+EIQLRIDP+ D DDE+TGL  QVR+L+N
Sbjct: 2   SNSLRGGSFYGDAAPFRSREGLSTRTPAASSDEIQLRIDPVGDFDDEITGLRGQVRKLRN 61

Query: 61  VAQEIGTEVKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVILFALVCF 120
           VA+EIGTEVK QKDFLEQLQMT+ KAQAGVKNNLRRLN+SI+++GSNHIVHV+LFAL+CF
Sbjct: 62  VAEEIGTEVKSQKDFLEQLQMTVAKAQAGVKNNLRRLNRSIVRNGSNHIVHVVLFALICF 121

Query: 121 FIVYLWSKMSRK 132
            IVYLWSKMSRK
Sbjct: 122 TIVYLWSKMSRK 133